Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   PXG99_RS12680 Genome accession   NZ_CP118911
Coordinates   2524817..2524936 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain XRD006     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519817..2529936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS12655 (PXG99_12655) - 2520059..2520817 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  PXG99_RS12660 (PXG99_12660) - 2520811..2521758 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  PXG99_RS12665 (PXG99_12665) ceuB 2521748..2522701 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  PXG99_RS12670 (PXG99_12670) - 2523115..2524479 (+) 1365 WP_015239155.1 aspartate kinase -
  PXG99_RS12675 (PXG99_12675) - 2524574..2524669 (+) 96 WP_021495118.1 YjcZ family sporulation protein -
  PXG99_RS12680 (PXG99_12680) phrC 2524817..2524936 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PXG99_RS12685 (PXG99_12685) rapC 2524920..2526068 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  PXG99_RS12690 (PXG99_12690) - 2526221..2527654 (-) 1434 WP_103042081.1 HAMP domain-containing sensor histidine kinase -
  PXG99_RS12695 (PXG99_12695) - 2527641..2528324 (-) 684 WP_014416901.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=796252 PXG99_RS12680 WP_003156334.1 2524817..2524936(-) (phrC) [Bacillus velezensis strain XRD006]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=796252 PXG99_RS12680 WP_003156334.1 2524817..2524936(-) (phrC) [Bacillus velezensis strain XRD006]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718