NTDB

Overview

Name	recG	Type	Machinery gene
Locus tag	RAH33_RS32480	Genome accession	NZ_CP132352
Coordinates	6799052..6801127 (+)	Length	691 a.a.
NCBI ID	WP_201890604.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain NY11352
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6794052..6806127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAH33_RS32450 (RAH33_32470)	-	6794474..6794854 (+)	381	WP_003096609.1	RidA family protein	-
RAH33_RS32455 (RAH33_32475)	-	6794909..6795640 (+)	732	WP_003096611.1	hypothetical protein	-
RAH33_RS32460 (RAH33_32480)	-	6795647..6796267 (-)	621	WP_003096613.1	LysE family translocator	-
RAH33_RS32465 (RAH33_32485)	-	6796334..6797134 (-)	801	WP_003096615.1	AraC family transcriptional regulator	-
RAH33_RS32470 (RAH33_32490)	-	6797134..6797985 (-)	852	WP_003096618.1	SDR family oxidoreductase	-
RAH33_RS32475 (RAH33_32495)	oxyR	6798123..6799055 (+)	933	WP_003096622.1	oxidative stress transcriptional regulator OxyR	-
RAH33_RS32480 (RAH33_32500)	recG	6799052..6801127 (+)	2076	WP_201890604.1	ATP-dependent DNA helicase RecG	Machinery gene
RAH33_RS32485 (RAH33_32505)	-	6801217..6802626 (+)	1410	WP_003096626.1	aminoacyl-tRNA deacylase and HDOD domain-containing protein	-
RAH33_RS32490 (RAH33_32510)	-	6802698..6803090 (-)	393	WP_003096629.1	hypothetical protein	-
RAH33_RS32495 (RAH33_32515)	-	6803226..6803498 (-)	273	WP_003096630.1	HU family DNA-binding protein	-
RAH33_RS32500 (RAH33_32520)	alkT	6803700..6804854 (-)	1155	WP_003096635.1	rubredoxin-NAD(+) reductase AlkT	-
RAH33_RS32505 (RAH33_32525)	-	6804906..6805073 (-)	168	WP_003098329.1	rubredoxin	-
RAH33_RS32510 (RAH33_32530)	-	6805257..6805424 (-)	168	WP_003098330.1	rubredoxin	-
RAH33_RS32515 (RAH33_32535)	-	6805558..6805959 (-)	402	WP_003096637.1	heme-binding protein	-

Sequence

Protein

Download Length: 691 a.a. Molecular weight: 76192.90 Da Isoelectric Point: 7.2591

                                >NTDB_id=796050 RAH33_RS32480 WP_201890604.1 6799052..6801127(+) (recG) [Pseudomonas aeruginosa strain NY11352]

MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL

VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR

LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR

EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV

ALMAPTEILAEQHFLNFSKWLQPLEIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR

FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE

GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA

SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG

LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide

Download Length: 2076 bp

                                >NTDB_id=796050 RAH33_RS32480 WP_201890604.1 6799052..6801127(+) (recG) [Pseudomonas aeruginosa strain NY11352]

ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG

CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC

TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG

GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG

CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGCGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC

TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC

CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG

CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG

CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC

GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT

CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG

TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG

GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGAGATCGA

AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG

TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC

TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC

CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC

GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA

GGGCGCCAGGCCTACTGGGTGTGCACCCTGATCGAAGAGTCCGAGGAACTTACCTGCCAGGCCGCCGAGACCACCTACGA

AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCTGTGGTGA

TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC

AGCCTGATGATCATCGAGAACCCTGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG

CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA

CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC

CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT

GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-170)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recG	Neisseria meningitidis strain C311	50.373	97.106	0.489
recG/mmsA	Streptococcus pneumoniae R6	40.719	96.671	0.394
recG/mmsA	Streptococcus pneumoniae R36A	40.719	96.671	0.394
recG	Bacillus subtilis subsp. subtilis str. 168	40.208	97.54	0.392

Detailed information NTG0796050