Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PYH69_RS15500 | Genome accession | NZ_CP118848 |
| Coordinates | 3071992..3072525 (-) | Length | 177 a.a. |
| NCBI ID | WP_016999204.1 | Uniprot ID | - |
| Organism | Mammaliicoccus lentus strain 7048 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3052357..3072525 | 3071992..3072525 | within | 0 |
Gene organization within MGE regions
Location: 3052357..3072525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH69_RS15395 (PYH69_15395) | - | 3052357..3053497 (-) | 1141 | Protein_2999 | IS3 family transposase | - |
| PYH69_RS15400 (PYH69_15400) | - | 3053763..3054431 (-) | 669 | WP_282862269.1 | hypothetical protein | - |
| PYH69_RS15405 (PYH69_15405) | - | 3054421..3055656 (-) | 1236 | WP_282862270.1 | ATP-binding domain-containing protein | - |
| PYH69_RS15410 (PYH69_15410) | - | 3055986..3056441 (-) | 456 | WP_282862272.1 | hypothetical protein | - |
| PYH69_RS15415 (PYH69_15415) | - | 3057619..3058146 (+) | 528 | WP_282862273.1 | hypothetical protein | - |
| PYH69_RS15420 (PYH69_15420) | - | 3058146..3059123 (+) | 978 | WP_282862274.1 | hypothetical protein | - |
| PYH69_RS15425 (PYH69_15425) | - | 3059141..3059608 (+) | 468 | WP_282862275.1 | hypothetical protein | - |
| PYH69_RS15430 (PYH69_15430) | - | 3059757..3061110 (+) | 1354 | Protein_3006 | IS1182 family transposase | - |
| PYH69_RS15435 (PYH69_15435) | - | 3061255..3062340 (+) | 1086 | WP_282862276.1 | tyrosine-type recombinase/integrase | - |
| PYH69_RS15440 (PYH69_15440) | - | 3062337..3064229 (+) | 1893 | WP_282862277.1 | tyrosine-type recombinase/integrase | - |
| PYH69_RS15445 (PYH69_15445) | - | 3064236..3064613 (+) | 378 | WP_282862278.1 | DUF6262 family protein | - |
| PYH69_RS15450 (PYH69_15450) | ant(9) | 3064767..3065549 (+) | 783 | WP_282862281.1 | aminoglycoside nucleotidyltransferase ANT(9) | - |
| PYH69_RS15455 (PYH69_15455) | erm(A) | 3065675..3066406 (-) | 732 | WP_282862282.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | - |
| PYH69_RS15460 (PYH69_15460) | - | 3066914..3067576 (+) | 663 | WP_282862284.1 | class I SAM-dependent methyltransferase | - |
| PYH69_RS15465 (PYH69_15465) | - | 3067772..3067963 (-) | 192 | WP_282862286.1 | helix-turn-helix domain-containing protein | - |
| PYH69_RS15470 (PYH69_15470) | - | 3068067..3068300 (-) | 234 | WP_282862287.1 | helix-turn-helix domain-containing protein | - |
| PYH69_RS15475 (PYH69_15475) | - | 3068439..3069353 (+) | 915 | WP_282862288.1 | helix-turn-helix transcriptional regulator | - |
| PYH69_RS15480 (PYH69_15480) | - | 3069367..3069576 (+) | 210 | WP_282862289.1 | hypothetical protein | - |
| PYH69_RS15485 (PYH69_15485) | - | 3069688..3070910 (+) | 1223 | Protein_3017 | site-specific integrase | - |
| PYH69_RS15490 (PYH69_15490) | - | 3070907..3071593 (+) | 687 | WP_282862290.1 | hypothetical protein | - |
| PYH69_RS15495 (PYH69_15495) | rpsR | 3071698..3071937 (-) | 240 | WP_282862291.1 | 30S ribosomal protein S18 | - |
| PYH69_RS15500 (PYH69_15500) | ssbA | 3071992..3072525 (-) | 534 | WP_016999204.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19815.49 Da Isoelectric Point: 4.9532
>NTDB_id=795841 PYH69_RS15500 WP_016999204.1 3071992..3072525(-) (ssbA) [Mammaliicoccus lentus strain 7048]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF
Nucleotide
Download Length: 534 bp
>NTDB_id=795841 PYH69_RS15500 WP_016999204.1 3071992..3072525(-) (ssbA) [Mammaliicoccus lentus strain 7048]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCG
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCG
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.538 |
100 |
0.633 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.056 |
100 |
0.554 |
| ssb | Vibrio cholerae strain A1552 |
35.359 |
100 |
0.362 |