Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH50_RS12945 Genome accession   NZ_CP118837
Coordinates   2572209..2572742 (-) Length   177 a.a.
NCBI ID   WP_016999204.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain 7050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2567209..2577742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH50_RS12910 (PYH50_12910) - 2567295..2568176 (+) 882 WP_218729229.1 hypothetical protein -
  PYH50_RS12915 (PYH50_12915) - 2568357..2569169 (+) 813 WP_218729228.1 glycosyl transferase -
  PYH50_RS12920 (PYH50_12920) - 2569351..2569704 (+) 354 WP_282821656.1 hypothetical protein -
  PYH50_RS12925 (PYH50_12925) coaA 2569786..2570688 (+) 903 WP_016999210.1 type I pantothenate kinase -
  PYH50_RS12930 (PYH50_12930) - 2570928..2571401 (+) 474 WP_218729226.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  PYH50_RS12935 (PYH50_12935) - 2571455..2571835 (+) 381 WP_239705248.1 DUF1722 domain-containing protein -
  PYH50_RS12940 (PYH50_12940) rpsR 2571912..2572154 (-) 243 WP_239705249.1 30S ribosomal protein S18 -
  PYH50_RS12945 (PYH50_12945) ssbA 2572209..2572742 (-) 534 WP_016999204.1 single-stranded DNA-binding protein Machinery gene
  PYH50_RS12950 (PYH50_12950) rpsF 2572773..2573066 (-) 294 WP_016999203.1 30S ribosomal protein S6 -
  PYH50_RS12955 (PYH50_12955) ychF 2573185..2574285 (-) 1101 WP_016999202.1 redox-regulated ATPase YchF -
  PYH50_RS12960 (PYH50_12960) - 2574287..2574484 (-) 198 WP_016999201.1 DUF951 domain-containing protein -
  PYH50_RS12965 (PYH50_12965) - 2574508..2575392 (-) 885 WP_016999200.1 mechanosensitive ion channel family protein -
  PYH50_RS12970 (PYH50_12970) - 2575405..2576238 (-) 834 WP_218729209.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19815.49 Da        Isoelectric Point: 4.9532

>NTDB_id=795776 PYH50_RS12945 WP_016999204.1 2572209..2572742(-) (ssbA) [Mammaliicoccus lentus strain 7050]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=795776 PYH50_RS12945 WP_016999204.1 2572209..2572742(-) (ssbA) [Mammaliicoccus lentus strain 7050]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.538

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

55.056

100

0.554
  ssb Vibrio cholerae strain A1552

35.359

100

0.362