Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q9L40_RS12630 Genome accession   NZ_CP132190
Coordinates   1616106..1618184 (-) Length   692 a.a.
NCBI ID   WP_305798977.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611106..1623184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS12610 (Q9L40_12610) greB 1611423..1611908 (+) 486 WP_113592693.1 transcription elongation factor GreB -
  Q9L40_RS12615 (Q9L40_12615) ompR 1612227..1612949 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  Q9L40_RS12620 (Q9L40_12620) envZ 1613018..1614334 (+) 1317 WP_001222682.1 two-component system sensor histidine kinase EnvZ -
  Q9L40_RS12625 (Q9L40_12625) - 1614359..1615759 (-) 1401 WP_000193491.1 uracil-xanthine permease family protein -
  Q9L40_RS12630 (Q9L40_12630) recG 1616106..1618184 (-) 2079 WP_305798977.1 ATP-dependent DNA helicase RecG Machinery gene
  Q9L40_RS12635 (Q9L40_12635) spoT 1618301..1620418 (-) 2118 WP_000280448.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  Q9L40_RS12640 (Q9L40_12640) rpoZ 1620450..1620722 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  Q9L40_RS12645 (Q9L40_12645) gmk 1620830..1621453 (-) 624 WP_000515796.1 guanylate kinase -
  Q9L40_RS12650 (Q9L40_12650) - 1621821..1622492 (+) 672 WP_029627709.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76918.17 Da        Isoelectric Point: 7.9764

>NTDB_id=795613 Q9L40_RS12630 WP_305798977.1 1616106..1618184(-) (recG) [Vibrio cholerae strain DRC187]
MSQLLSAVPLCELSGVGAKVAEKLKKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=795613 Q9L40_RS12630 WP_305798977.1 1616106..1618184(-) (recG) [Vibrio cholerae strain DRC187]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGAAGAAAGT
CGGTTTGCACACGGTGCAAGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGTAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGCACGCTGACGCTGCGCTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAGTTTGTGCATGCCTATGGGGAGATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTCACTCCGGTTTACCCAACCACTGAAGGGCTACGCCAACTC
ACCCTGCGTAATTTGACCGACCAAGCGTTGGCGCTGCTTGAAAAATCTGCGGTGCAAGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGTCCATCGGCGGATATCGATCTGCGCCTATTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAGCTGCTAGCGCAGAATCTCTCGATGCTCGCGATTCGCAGT
CAAGGCCAACAAGATGTGGCCTTACCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCCTTTTC
TCCAACTAAGGCGCAGCAGCGCGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCGGTGCGGGCGATTGAGCATGGCTATCAAGTCGCC
TTGATGGCTCCGACCGAGCTGTTGGCCGAGCAGCACGCACTCAATTTTGCGCAGTGGCTGGAACCTATGGGCATTCAAGT
GGGCTGGCTCGCGGGTAAGCTTAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGCGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAACAAGTGTCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGTGCGTATCCGCATCAGCTCATCATGACCGC
CACTCCTATTCCGCGCACATTAGCGATGACGGCTTATGCCGATTTGGAAACCTCGGTGATTGATGAGTTGCCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATACGCCACGCCTGCCTCAAT
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGACGAATCCGAAGTACTGGAAGCGCAAGCGGCCGCAGAAACAGC
AGAAGAGCTGCAACGCAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCTGAGAAGCAAGCGG
TAATGCAGGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACCACAGTGATTGAAGTGGGTGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTAGCTCAATTACACCAGCTACGCGGCCGTGTTGGCCGTGG
CACCGTAGCCAGTCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAGCGCGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)

RecG wedge domain (RecG_wedge)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371