Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Q9L40_RS08625 Genome accession   NZ_CP132190
Coordinates   760207..760932 (+) Length   241 a.a.
NCBI ID   WP_000877193.1    Uniprot ID   A0AAW4H1Z8
Organism   Vibrio cholerae strain DRC187     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755207..765932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS08610 (Q9L40_08610) clpC 755665..758238 (-) 2574 WP_001235050.1 ATP-dependent chaperone ClpB Regulator
  Q9L40_RS08615 (Q9L40_08615) pgeF 758353..759075 (-) 723 WP_057644184.1 peptidoglycan editing factor PgeF -
  Q9L40_RS08620 (Q9L40_08620) rluD 759078..760052 (-) 975 WP_057644180.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Q9L40_RS08625 (Q9L40_08625) comL 760207..760932 (+) 726 WP_000877193.1 outer membrane protein assembly factor BamD Machinery gene
  Q9L40_RS08630 (Q9L40_08630) hpf 761333..761662 (+) 330 WP_000700175.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Q9L40_RS08635 (Q9L40_08635) pheA 761909..763084 (+) 1176 WP_000130282.1 prephenate dehydratase -
  Q9L40_RS08640 (Q9L40_08640) - 763266..764306 (+) 1041 WP_000595735.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27889.76 Da        Isoelectric Point: 6.2674

>NTDB_id=795582 Q9L40_RS08625 WP_000877193.1 760207..760932(+) (comL) [Vibrio cholerae strain DRC187]
MKYQTLSGLLALSLLFGCSSGRDVVPDVPPSELYSQAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLDIQLKAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=795582 Q9L40_RS08625 WP_000877193.1 760207..760932(+) (comL) [Vibrio cholerae strain DRC187]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCGGCCGAGACGTAGTGCCAGA
TGTACCGCCATCAGAGCTATACTCACAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAACTTGATTTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACTTGTTTAATATCGATCGCCGTGACCGCG
ATCCAGAACCCGTGAAAGCGGCCTTTGCGGATTTTAAGAAGCTGCTCCAGCGTTACCCCAACAGCCCATACGCAGAAGAT
GCACAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCAGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCGGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCTGCACGTAAATCCTTAG
ACATCCAACTCAAGGCTTATCAGCAGCTTGGTTTAACCGACGCAATAGAACGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAW4H1Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

36.885

100

0.373
  comL Neisseria gonorrhoeae MS11

36.885

100

0.373