Detailed information NTG0795581

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: Q9L40_RS08610
• Genome accession: NZ_CP132190
• Coordinates: 755665..758238 (-)
• Length: 857 a.a.
• NCBI ID: WP_001235050.1
• Uniprot ID: A0AAX1QPL8
• Organism: Vibrio cholerae strain DRC187
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 750665..763238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9L40_RS08610 (Q9L40_08610)	clpC	755665..758238 (-)	2574	WP_001235050.1	ATP-dependent chaperone ClpB	Regulator
Q9L40_RS08615 (Q9L40_08615)	pgeF	758353..759075 (-)	723	WP_057644184.1	peptidoglycan editing factor PgeF	-
Q9L40_RS08620 (Q9L40_08620)	rluD	759078..760052 (-)	975	WP_057644180.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
Q9L40_RS08625 (Q9L40_08625)	comL	760207..760932 (+)	726	WP_000877193.1	outer membrane protein assembly factor BamD	Machinery gene
Q9L40_RS08630 (Q9L40_08630)	hpf	761333..761662 (+)	330	WP_000700175.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
Q9L40_RS08635 (Q9L40_08635)	pheA	761909..763084 (+)	1176	WP_000130282.1	prephenate dehydratase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95746.68 Da
• Isoelectric Point: 5.3019

>NTDB_id=795581 Q9L40_RS08610 WP_001235050.1 755665..758238(-) (clpC) [Vibrio cholerae strain DRC187]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDAMQLRSKLGEMLDRLPKVSGIGGD
VQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAALEDKGPLGTLLKEFGLTEKKLSDAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE
QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFARLDYQGIKEQVMDIVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYPLEVDDEAL
DLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKDGNIFASQ

Nucleotide

• Length: 2574 bp

>NTDB_id=795581 Q9L40_RS08610 WP_001235050.1 755665..758238(-) (clpC) [Vibrio cholerae strain DRC187]
ATGCGTCTTGACAGATTTACGAGCAAATTTCAGATCGCGATTTCCGATGCCCAGTCATTAGCGCTCGGCCGTGATCATCA
ATATATCGAACCTGTGCACCTGATGGTGGCTCTGCTGGATCAAAACGGCAGCCCAATTCGCCCATTACTCACCATGCTCA
ATGTGGATGCGATGCAACTGCGCTCCAAACTTGGCGAAATGCTTGATCGTTTACCCAAAGTCAGTGGTATTGGTGGTGAT
GTACAGCTCTCTTCGGCGCTTGGCTCGCTGTTTAATCTGTGTGATAAGGTTGCGCAAAAGCGTCAAGATGCCTACATCTC
CTCCGAAATCTATCTGTTGGCTGCATTAGAAGATAAAGGTCCACTTGGAACCTTGCTTAAAGAGTTTGGACTGACCGAGA
AGAAGCTCTCTGATGCAATTGAAAAAATTCGTGGCGGCCAGAAGGTCAATGATCCTAATGCAGAAGAGCTGCGCCAAGCG
TTGGAAAAATTCACCATCGATCTGACTGAGCGCGCTGAGCAGGGCAAACTCGATCCTGTGATCGGTCGTGATGATGAAAT
TCGTCGCACCATTCAAGTGCTGCAGCGTCGTACTAAAAACAACCCAGTGATCATCGGTGAACCCGGTGTCGGTAAAACTG
CGATAGTGGAAGGTTTAGCGCAGCGCATCATTAATAATGAAGTACCAGAAGGCCTGCGTGGGCGCCGCGTATTGTCTTTA
GATATGGGCGCACTGGTGGCTGGAGCGAAATACCGCGGCGAATTTGAAGAGCGCTTGAAATCAGTGCTCAACGAGCTGGC
TAAGGAAGAGGGCAATGTCATCTTATTTATTGATGAGCTGCACACCATGGTTGGCGCTGGGAAAGGCGAAGGCTCGATGG
ATGCGGGCAATATGCTCAAACCCGCTTTGGCGCGTGGTGAGTTGCACTGTGTCGGCGCAACCACTTTAGATGAGTACCGC
CAATACATCGAAAAAGATCCAGCGCTAGAGCGCCGCTTCCAAAAAGTGTTGGTCGATGAACCAACGGTAGAAGATACCAT
CGCCATCTTGCGTGGATTGAAAGAGCGGTATGAGCTGCACCACCATGTCGAAATTACAGACCCAGCGATTGTGGCGGCAG
CGAGCCTATCGCATCGCTATATTTCTGATCGCCAATTACCCGATAAAGCGATCGATTTGATCGATGAAGCGGCTTCAAGC
ATTCGGATGCAGATTGACTCCAAACCAGAAGCTCTGGACAAGCTTGAGCGCAAAATCATCCAACTGAAAATCGAGCAGCA
AGCGCTCTCTAATGAGCACGATGAAGCCAGTGAAAAACGCTTGGCGATCTTAAATGAAGAGCTGCAAGAGAAAGAGCGCG
ATTACGCGGAGTTGGAAGAAGTATGGAAAGCGGAAAAGGCGGCACTCTCCGGCACACAACACATTAAAGCTGCACTTGAA
CAAGCGCGGATGGATCTGGAAGTCGCTCGCCGTGCGGGGGATTTGAACCGCATGTCAGAGCTGCAATATGGCCGCATTCC
TGAGCTAGAAAAGCAGCTTGATCTAGCCGCGCAGGCTGAAATGCAGGAAATGACTCTGCTGCGTAATAAAGTGACGGATG
CAGAAATTGCCGAGGTGCTTTCTAAACAGACTGGTATTCCTGTATCAAAAATGCTTGAAGCCGAGAAAGAAAAGTTGCTG
CGCATGGAAGAAGTGCTGCATAAACGCGTGATCGGCCAAAAAGAAGCGGTAGAAGTGGTCGCGAATGCGATCCGTCGTAG
TCGCGCAGGGCTTTCTGATCCAAATCGTCCGATTGGCTCCTTCTTATTCTTAGGGCCAACGGGGGTCGGTAAAACTGAGC
TGTGTAAAACCTTAGCCAACTTCCTGTTTGATAGCGAAGATGCCATGGTACGTGTGGATATGTCGGAATTTATGGAGAAA
CACTCGGTTGCTCGTTTAGTCGGTGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGTGGCTACTTAACGGAAGCTGTACG
CCGTAAACCTTACTCGGTGATTTTGCTTGATGAAGTGGAAAAGGCACACCCGGATGTATTCAATATTCTGTTGCAAGTCT
TGGATGATGGCCGCTTGACGGATGGGCAAGGGCGCACGGTCGATTTTCGAAATACCGTGGTGATCATGACCTCCAACTTG
GGTTCAAGTCGTATCCAAGAAAATTTTGCAAGGTTGGACTATCAAGGCATTAAAGAACAAGTGATGGATATAGTCAGCAA
ACACTTCAGACCTGAGTTCTTAAACCGAGTCGATGAAAGTGTGGTATTCCACCCATTAGGTCAAGAGCATATTAAGTCGA
TCGCCTCTATTCAGTTGGCACGATTACGTCAGCGTTTGGCAGAGCGAGACTACCCACTTGAGGTGGATGATGAGGCGCTG
GATCTGATTGCTCATGTTGGCTTCGATCCGGTTTATGGTGCTCGTCCACTGAAACGTGCGATTCAACAAAATGTGGAAAA
TCCATTAGCCAAATCGATTCTGGCTGGTAAGTTCCTGCCTGGCTCACCTATTTTACTATCGGTAAAAGACGGGAATATTT
TCGCAAGCCAGTAG

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (342-442)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-843)

3D structure

• AlphaFold DB: A0AAX1QPL8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.338	100	0.477
clpC	Lactococcus lactis subsp. cremoris KW2	47.33	80.863	0.383