Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   PYH66_RS04790 Genome accession   NZ_CP118816
Coordinates   1009989..1010618 (+) Length   209 a.a.
NCBI ID   WP_014613482.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7058     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004989..1015618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH66_RS04765 (PYH66_04730) - 1005902..1006900 (-) 999 WP_262611975.1 aromatic acid exporter family protein -
  PYH66_RS04770 (PYH66_04735) map 1006997..1007758 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  PYH66_RS04775 (PYH66_04740) - 1007856..1008245 (+) 390 WP_262611976.1 hypothetical protein -
  PYH66_RS04780 (PYH66_04745) liaF 1008258..1008959 (+) 702 WP_096597675.1 cell wall-active antibiotics response protein LiaF -
  PYH66_RS04785 (PYH66_04750) vraS 1008956..1009999 (+) 1044 WP_353419743.1 sensor histidine kinase Regulator
  PYH66_RS04790 (PYH66_04755) vraR 1009989..1010618 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  PYH66_RS04795 (PYH66_04760) - 1011054..1011635 (-) 582 WP_096597677.1 carbonic anhydrase -
  PYH66_RS04800 (PYH66_04765) - 1011668..1013014 (-) 1347 WP_262611979.1 YhjD/YihY/BrkB family envelope integrity protein -
  PYH66_RS04805 (PYH66_04770) - 1013230..1013517 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  PYH66_RS04810 (PYH66_04775) - 1013525..1013983 (-) 459 WP_262611980.1 low molecular weight protein-tyrosine-phosphatase -
  PYH66_RS04815 (PYH66_04780) - 1014117..1014320 (+) 204 WP_019169369.1 DUF1128 family protein -
  PYH66_RS04820 (PYH66_04785) - 1014342..1015574 (+) 1233 WP_353419744.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23484.17 Da        Isoelectric Point: 5.1671

>NTDB_id=795557 PYH66_RS04790 WP_014613482.1 1009989..1010618(+) (vraR) [Staphylococcus delphini strain 7058]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=795557 PYH66_RS04790 WP_014613482.1 1009989..1010618(+) (vraR) [Staphylococcus delphini strain 7058]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTGGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTGAAACCGGATTTGATTTTAA
TGGATTTAGTGATGACGGATATGGATGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACAAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTCGATAGTTATATTTTAAAAACGAC
AAGTGCTAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAGTTGTTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGAAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCTTTCCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.823

100

0.928
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383