Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   PYH66_RS04785 Genome accession   NZ_CP118816
Coordinates   1008956..1009999 (+) Length   347 a.a.
NCBI ID   WP_353419743.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7058     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1003956..1014999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH66_RS04760 (PYH66_04725) - 1004096..1004818 (+) 723 WP_353419742.1 glutamine amidotransferase -
  PYH66_RS04765 (PYH66_04730) - 1005902..1006900 (-) 999 WP_262611975.1 aromatic acid exporter family protein -
  PYH66_RS04770 (PYH66_04735) map 1006997..1007758 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  PYH66_RS04775 (PYH66_04740) - 1007856..1008245 (+) 390 WP_262611976.1 hypothetical protein -
  PYH66_RS04780 (PYH66_04745) liaF 1008258..1008959 (+) 702 WP_096597675.1 cell wall-active antibiotics response protein LiaF -
  PYH66_RS04785 (PYH66_04750) vraS 1008956..1009999 (+) 1044 WP_353419743.1 sensor histidine kinase Regulator
  PYH66_RS04790 (PYH66_04755) vraR 1009989..1010618 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  PYH66_RS04795 (PYH66_04760) - 1011054..1011635 (-) 582 WP_096597677.1 carbonic anhydrase -
  PYH66_RS04800 (PYH66_04765) - 1011668..1013014 (-) 1347 WP_262611979.1 YhjD/YihY/BrkB family envelope integrity protein -
  PYH66_RS04805 (PYH66_04770) - 1013230..1013517 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  PYH66_RS04810 (PYH66_04775) - 1013525..1013983 (-) 459 WP_262611980.1 low molecular weight protein-tyrosine-phosphatase -
  PYH66_RS04815 (PYH66_04780) - 1014117..1014320 (+) 204 WP_019169369.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39881.10 Da        Isoelectric Point: 5.0397

>NTDB_id=795556 PYH66_RS04785 WP_353419743.1 1008956..1009999(+) (vraS) [Staphylococcus delphini strain 7058]
MNHYVRAIGSMLILVYSTLTAFFFIDKVFTNIIFFQGMFYTQILGIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWVKQ
QIVRAFEGETVGINDQQLELYNETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKSLVTDLQRKVPIKVVQEI
DEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVELLNRNDYLLLRIQDDGIGFNVDDKLEQSYGLKNMRERAIEIGAT
FHIVSLPDAGTRIEVKAPLEKEEQHDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=795556 PYH66_RS04785 WP_353419743.1 1008956..1009999(+) (vraS) [Staphylococcus delphini strain 7058]
ATGAATCACTACGTCCGAGCGATAGGTTCGATGCTCATTCTCGTATATAGTACGCTCACCGCGTTTTTCTTTATCGATAA
AGTGTTTACCAATATTATTTTCTTTCAAGGCATGTTTTATACACAAATTTTAGGGATTCCTGTTTTTATCTTTTTAAATT
TAGTCGTCATTTTTTTATGTATTATCGTGGGCAGTGTGTTAGCTTATAAAATCAATCAACAAAATGATTGGGTGAAGCAA
CAAATCGTTCGTGCTTTCGAAGGCGAAACAGTGGGAATCAATGATCAACAACTTGAGCTGTATAATGAAACGATTGAATT
GTACCAAGCGCTCGTCCCATTGAATCAAGAACTGCATAAAATGCGGATTAAAACACAAAATTTAACGAATGAAACGTATA
ATTTAAATGATTTGAAGGTGAAAAAGATTATAGAAGATGAACGGCAGCGTTTAGCACGAGAATTGCATGATAGTGTGTCG
CAACAACTTTTCGCGGCAAGTATGATGTTGTCTGCAATCAAGGAAACAGATTTAGCTCCACCGTTAGACCAACAAATTCC
AACGTTAGAAAAAATGGTGCAAGACTCACAACTTGAAATGCGTGCACTGTTACTTCATTTAAGACCTATAGGATTGAAGG
ATAAATCGTTAGGTGAGGGGATAAAATCGCTCGTGACGGATTTACAACGCAAAGTGCCCATTAAAGTCGTGCAAGAAATT
GATGAGTTTGAAGTCCCTAAAGGTATTGAGGATCACCTTTTTAGGATTACCCAAGAAGCGATTTCCAATACGTTACGACA
TGCTGAGGGAACGCAAGTAACAGTAGAATTACTTAACCGCAATGATTATTTATTGTTGCGTATACAAGATGACGGCATTG
GATTTAATGTCGATGATAAATTAGAACAAAGTTATGGATTAAAAAATATGCGTGAACGTGCAATAGAGATTGGTGCCACG
TTTCATATCGTCTCATTACCTGATGCAGGGACGAGAATAGAAGTGAAAGCACCACTTGAAAAGGAGGAACAGCATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

83.285

100

0.833