Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH63_RS13150 Genome accession   NZ_CP118788
Coordinates   2718718..2719221 (-) Length   167 a.a.
NCBI ID   WP_096539724.1    Uniprot ID   A0AAQ0M749
Organism   Staphylococcus delphini strain 7070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2713718..2724221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS13130 (PYH63_13040) - 2714909..2716900 (+) 1992 WP_353421446.1 catalase -
  PYH63_RS13135 (PYH63_13045) - 2716977..2717315 (-) 339 WP_262610886.1 hypothetical protein -
  PYH63_RS13140 (PYH63_13050) - 2717291..2718052 (-) 762 WP_353421447.1 MFS transporter -
  PYH63_RS13145 (PYH63_13055) rpsR 2718423..2718665 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  PYH63_RS13150 (PYH63_13060) ssbA 2718718..2719221 (-) 504 WP_096539724.1 single-stranded DNA-binding protein Machinery gene
  PYH63_RS13155 (PYH63_13065) rpsF 2719244..2719540 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  PYH63_RS13160 (PYH63_13070) - 2719883..2720329 (+) 447 WP_316959867.1 B domain-containing protein -
  PYH63_RS13165 (PYH63_13075) - 2720360..2721358 (+) 999 WP_353421448.1 C3-binding domain-containing protein -
  PYH63_RS13170 (PYH63_13080) - 2721412..2722221 (-) 810 WP_096648970.1 ABC transporter permease -
  PYH63_RS13175 (PYH63_13085) - 2722223..2723151 (-) 929 Protein_2553 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18610.29 Da        Isoelectric Point: 5.1957

>NTDB_id=795271 PYH63_RS13150 WP_096539724.1 2718718..2719221(-) (ssbA) [Staphylococcus delphini strain 7070]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQPANDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=795271 PYH63_RS13150 WP_096539724.1 2718718..2719221(-) (ssbA) [Staphylococcus delphini strain 7070]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTTAACAATTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAGAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGTTTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTACCAAAACAATCATCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGCCCTATCGATATT
AGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.143

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383