Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QFX49_RS08755 Genome accession   NZ_CP132038
Coordinates   1732871..1733473 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 1.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727871..1738473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX49_RS08715 - 1727954..1728073 (+) 120 WP_000840602.1 hypothetical protein -
  QFX49_RS08720 mreC 1728273..1729115 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  QFX49_RS08725 mreD 1729115..1729645 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  QFX49_RS08730 rplU 1729812..1730120 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QFX49_RS08735 - 1730126..1730446 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QFX49_RS08740 rpmA 1730458..1730742 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QFX49_RS08745 obgE 1731097..1732389 (+) 1293 WP_000496100.1 GTPase ObgE -
  QFX49_RS08750 - 1732402..1732857 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QFX49_RS08755 ruvA 1732871..1733473 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QFX49_RS08760 ruvB 1733505..1734509 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QFX49_RS08765 queA 1734511..1735536 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QFX49_RS08770 tgt 1735559..1736698 (+) 1140 WP_304984663.1 tRNA guanosine(34) transglycosylase Tgt -
  QFX49_RS08775 yajC 1736717..1736977 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=795154 QFX49_RS08755 WP_000271547.1 1732871..1733473(+) (ruvA) [Staphylococcus aureus strain 1.6]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=795154 QFX49_RS08755 WP_000271547.1 1732871..1733473(+) (ruvA) [Staphylococcus aureus strain 1.6]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425