Detailed information NTG0079476

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SKTS_RS14360
• Genome accession: NZ_AP022853
• Coordinates: 2966086..2967441 (-)
• Length: 451 a.a.
• NCBI ID: WP_244617349.1
• Uniprot ID: A0A6F8VDM3
• Organism: Sulfurimicrobium lacus strain skT11
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2961086..2972441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SKTS_RS14350 (SKTS_28070)	-	2961572..2964034 (+)	2463	WP_173066424.1	glycogen/starch/alpha-glucan phosphorylase	-
SKTS_RS14355 (SKTS_28080)	-	2964081..2966060 (+)	1980	WP_173066427.1	TonB-dependent receptor	-
SKTS_RS14360 (SKTS_28090)	pilR	2966086..2967441 (-)	1356	WP_244617349.1	sigma-54 dependent transcriptional regulator	Regulator
SKTS_RS14365 (SKTS_28100)	-	2967438..2969051 (-)	1614	WP_173066430.1	ATP-binding protein	-
SKTS_RS14370 (SKTS_28110)	-	2969067..2969300 (-)	234	WP_173066433.1	PP0621 family protein	-
SKTS_RS14375 (SKTS_28120)	-	2969593..2971137 (+)	1545	WP_173066436.1	ATP-binding protein	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49588.04 Da
• Isoelectric Point: 5.0306

>NTDB_id=79476 SKTS_RS14360 WP_244617349.1 2966086..2967441(-) (pilR) [Sulfurimicrobium lacus strain skT11]
MKRARGNAANFLALIVDDEADILELLELTLLKMGLEVERASTVQAALKLVEEKQFDLCLTDMRLPDGEGLELVRYIGANC
PDLPVAVITAHGSTENAVAALKAGAFDYLAKPVSLEQLRAVVKSALKLPSAPEPTAEQGYVLLGQSPAMEQVRGLIDKLA
RSQAPVYVSGESGSGKELAARLIHEKSARREKPFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDRDGFFQAANGGTLFL
DEVADLPLAMQVKLLRVIQEKKVRKVGATQEEPVDVRIISATHQKLADCVEHGKFRQDLYYRLNVIELKMPALREMRDDV
PLIAGNILARLARQAGAALPEFSAAGVEALQQYDFPGNVRELENILERTLALCGGSRIEMDDLHLTEPENDGPAIYEPGA
KWPLPDYLDRVEKEALQEALEKTRYNKTAAAKLLGITFRALRYRLARLGID

Nucleotide

• Length: 1356 bp

>NTDB_id=79476 SKTS_RS14360 WP_244617349.1 2966086..2967441(-) (pilR) [Sulfurimicrobium lacus strain skT11]
TTGAAACGTGCGAGAGGCAATGCGGCAAATTTTCTTGCCCTGATCGTGGATGACGAAGCCGACATCCTTGAGTTGCTCGA
ACTTACCTTGTTGAAAATGGGCCTGGAGGTGGAGCGTGCCTCCACGGTCCAGGCTGCGCTCAAGCTCGTGGAGGAAAAGC
AGTTCGATCTATGCCTCACCGACATGCGCCTGCCCGACGGCGAGGGACTGGAACTGGTGCGCTACATCGGTGCCAATTGC
CCCGATCTGCCGGTGGCGGTGATTACCGCGCACGGCAGCACCGAGAACGCGGTAGCCGCCCTGAAGGCGGGCGCCTTCGA
CTACCTGGCCAAGCCGGTGTCTCTCGAACAGCTGCGCGCGGTAGTGAAATCGGCGCTCAAGCTGCCGTCGGCGCCGGAGC
CGACGGCGGAGCAAGGCTACGTGCTGCTCGGCCAGTCTCCCGCCATGGAACAGGTGCGCGGCCTGATCGACAAGCTGGCG
CGCAGCCAGGCGCCGGTCTATGTGAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGCGGCGCGCCTGATACACGAAAAGAG
CGCGCGGCGCGAAAAACCCTTCGTGCCGGTGAACTGCGGCGCGATTCCGGAAAACCTCATGGAAAGCGAATTTTTCGGTT
ACCGCAAGGGCGCCTTCACCGGCGCGGAGCAGGACCGCGACGGATTTTTCCAGGCGGCCAACGGCGGCACCCTGTTTCTC
GACGAAGTGGCCGATCTGCCCTTGGCCATGCAGGTCAAGCTGCTGCGGGTTATCCAGGAGAAGAAAGTGCGCAAGGTGGG
CGCCACGCAGGAAGAGCCGGTGGACGTGCGCATTATCAGCGCGACCCACCAGAAGCTGGCTGATTGCGTGGAGCACGGAA
AATTCCGCCAGGACCTCTATTACCGCCTCAACGTGATCGAGCTCAAGATGCCCGCTTTGCGCGAAATGCGCGATGACGTG
CCGCTCATCGCCGGCAATATCCTGGCCAGGCTGGCGCGCCAGGCCGGTGCTGCGCTGCCGGAGTTTTCTGCGGCGGGGGT
GGAGGCGTTGCAACAATACGACTTCCCCGGCAATGTGCGGGAACTGGAAAACATCCTGGAGCGCACGCTGGCTCTGTGCG
GCGGCAGCCGGATCGAGATGGACGACCTGCACCTGACCGAGCCGGAGAACGACGGCCCCGCCATTTACGAACCGGGCGCC
AAATGGCCGCTGCCGGATTATCTCGACCGGGTGGAGAAGGAAGCGTTGCAGGAGGCGCTGGAAAAAACCCGTTACAACAA
GACCGCGGCGGCGAAGCTGCTGGGGATTACCTTCCGGGCGTTGAGATACCGGCTGGCGCGCTTAGGCATTGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (408-447)

• Sigma-54 interaction domain (Sigma54_activat) (142-308)

• Response regulator receiver domain (Response_reg) (14-122)

3D structure

• AlphaFold DB: A0A6F8VDM3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.508	99.113	0.59
pilR	Acinetobacter baumannii strain A118	45.87	100	0.468
luxO	Vibrio cholerae strain A1552	38.391	96.452	0.37