Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   PW252_RS09505 Genome accession   NZ_CP118735
Coordinates   1951957..1952994 (-) Length   345 a.a.
NCBI ID   WP_248049876.1    Uniprot ID   A0AA96VJ78
Organism   Streptococcus iners strain 29887     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946957..1957994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS11355 - 1947892..1947984 (-) 93 Protein_1833 translation initiation factor IF-2 N-terminal domain-containing protein -
  PW252_RS09475 (PW252_09480) - 1948002..1948310 (-) 309 WP_248049873.1 YlxQ-related RNA-binding protein -
  PW252_RS09480 (PW252_09485) rnpM 1948297..1948593 (-) 297 WP_029179281.1 RNase P modulator RnpM -
  PW252_RS09485 (PW252_09490) nusA 1948610..1949752 (-) 1143 WP_248049875.1 transcription termination factor NusA -
  PW252_RS09490 (PW252_09495) rimP 1949792..1950262 (-) 471 WP_105125183.1 ribosome maturation factor RimP -
  PW252_RS09495 (PW252_09500) trmB 1950477..1951112 (-) 636 WP_105125184.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PW252_RS09500 (PW252_09505) ccrZ 1951109..1951903 (-) 795 WP_172049634.1 cell cycle regulator CcrZ -
  PW252_RS09505 (PW252_09510) pptB 1951957..1952994 (-) 1038 WP_248049876.1 ABC transporter permease Regulator
  PW252_RS09510 (PW252_09515) pptA 1952991..1953725 (-) 735 WP_248049877.1 ABC transporter ATP-binding protein Regulator
  PW252_RS09515 (PW252_09520) - 1953787..1954200 (+) 414 WP_248049878.1 HIT family protein -
  PW252_RS09520 (PW252_09525) - 1954202..1954495 (+) 294 WP_248033066.1 chemotaxis protein -
  PW252_RS09525 (PW252_09530) - 1954539..1955771 (-) 1233 WP_248049879.1 LCP family protein -
  PW252_RS09530 (PW252_09535) - 1955771..1956295 (-) 525 WP_248049880.1 GNAT family N-acetyltransferase -
  PW252_RS09535 (PW252_09540) tsaE 1956288..1956728 (-) 441 WP_316716862.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40581.06 Da        Isoelectric Point: 10.0736

>NTDB_id=794751 PW252_RS09505 WP_248049876.1 1951957..1952994(-) (pptB) [Streptococcus iners strain 29887]
MKALFQKRRRDFLERCSKYLRYVLNDHFVLVLMVFLGFLSLQYRQLLIAFPENTWPIILIALAISFLLLFSGSIATYLEE
ADQVFLLTKEKEVLEELAVASRRSYLLWSGLQVLVQLLLLPIYLKLGLAVWMVVVYIVALLVAKYFLVKYQLAGYQQQGV
LNWSTAIQDEQKRKQTILRFFALFTTVKGISTTVKPRKYLNGILRLLHSRQTWFYLYLRAFLRAGDYFGLSLRLFLLILL
SLIAIEEAWLSLGLVLVFHYLLLFQLLGLYKHYDYQYLTQLYPLDKKGKIRDFQRLLRVILYGLLLVEMLVALLFIQEKM
LIVILPIVCLFLHEVYLPAKLKKID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=794751 PW252_RS09505 WP_248049876.1 1951957..1952994(-) (pptB) [Streptococcus iners strain 29887]
ATGAAAGCATTGTTCCAAAAACGCAGACGTGATTTTCTAGAACGGTGTTCCAAGTACCTGCGCTATGTTCTGAATGACCA
TTTTGTCTTGGTTCTCATGGTCTTCTTGGGCTTCTTGAGTTTGCAGTATCGACAACTCTTGATAGCTTTTCCTGAAAATA
CCTGGCCCATTATTCTGATTGCTCTTGCTATCAGTTTCTTGCTCTTGTTTTCTGGCAGCATTGCCACCTATTTGGAGGAA
GCAGATCAGGTATTTCTACTGACAAAAGAAAAGGAAGTCTTAGAAGAACTGGCTGTTGCAAGTCGACGTTCTTACCTGCT
CTGGTCTGGACTACAGGTCTTAGTCCAGCTCCTGCTCTTGCCCATTTATCTGAAGTTGGGTTTGGCCGTTTGGATGGTGG
TTGTTTATATAGTGGCCTTGCTTGTTGCCAAATATTTTCTAGTAAAATACCAGCTAGCAGGCTACCAGCAACAAGGTGTT
TTGAACTGGTCTACAGCCATTCAGGATGAGCAGAAGAGAAAACAGACTATCCTGCGCTTCTTTGCTCTCTTTACAACCGT
TAAAGGAATTAGTACGACCGTCAAGCCAAGAAAGTATCTCAATGGGATTTTACGTTTGCTTCATTCTCGCCAAACCTGGT
TCTATCTCTACTTGAGAGCATTTTTACGGGCTGGGGATTATTTTGGTCTCAGTTTGCGCCTCTTCTTGCTCATCCTTTTG
TCCTTGATAGCCATTGAAGAAGCTTGGCTCTCTCTTGGTCTGGTATTGGTCTTTCATTATCTGCTCCTCTTTCAACTTTT
GGGGCTCTACAAGCACTATGATTACCAGTATTTGACCCAACTCTATCCCTTGGACAAAAAAGGTAAAATAAGAGATTTTC
AGCGCTTGCTTCGGGTCATTTTATACGGGCTCTTGTTGGTGGAAATGCTGGTCGCTCTGCTATTTATCCAAGAAAAAATG
CTGATTGTGATTCTCCCTATCGTCTGTCTTTTCTTACATGAAGTCTATTTACCTGCAAAATTGAAAAAAATTGATTGA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(123-328)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.844

100

0.49
  pptB Streptococcus salivarius strain HSISS4

47.688

100

0.478