Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PW252_RS09510 Genome accession   NZ_CP118735
Coordinates   1952991..1953725 (-) Length   244 a.a.
NCBI ID   WP_248049877.1    Uniprot ID   A0AA96VMM0
Organism   Streptococcus iners strain 29887     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947991..1958725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS09475 (PW252_09480) - 1948002..1948310 (-) 309 WP_248049873.1 YlxQ-related RNA-binding protein -
  PW252_RS09480 (PW252_09485) rnpM 1948297..1948593 (-) 297 WP_029179281.1 RNase P modulator RnpM -
  PW252_RS09485 (PW252_09490) nusA 1948610..1949752 (-) 1143 WP_248049875.1 transcription termination factor NusA -
  PW252_RS09490 (PW252_09495) rimP 1949792..1950262 (-) 471 WP_105125183.1 ribosome maturation factor RimP -
  PW252_RS09495 (PW252_09500) trmB 1950477..1951112 (-) 636 WP_105125184.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PW252_RS09500 (PW252_09505) ccrZ 1951109..1951903 (-) 795 WP_172049634.1 cell cycle regulator CcrZ -
  PW252_RS09505 (PW252_09510) pptB 1951957..1952994 (-) 1038 WP_248049876.1 ABC transporter permease Regulator
  PW252_RS09510 (PW252_09515) pptA 1952991..1953725 (-) 735 WP_248049877.1 ABC transporter ATP-binding protein Regulator
  PW252_RS09515 (PW252_09520) - 1953787..1954200 (+) 414 WP_248049878.1 HIT family protein -
  PW252_RS09520 (PW252_09525) - 1954202..1954495 (+) 294 WP_248033066.1 chemotaxis protein -
  PW252_RS09525 (PW252_09530) - 1954539..1955771 (-) 1233 WP_248049879.1 LCP family protein -
  PW252_RS09530 (PW252_09535) - 1955771..1956295 (-) 525 WP_248049880.1 GNAT family N-acetyltransferase -
  PW252_RS09535 (PW252_09540) tsaE 1956288..1956728 (-) 441 WP_316716862.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  PW252_RS09540 (PW252_09545) - 1956829..1958493 (-) 1665 WP_248049883.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26773.13 Da        Isoelectric Point: 4.5270

>NTDB_id=794752 PW252_RS09510 WP_248049877.1 1952991..1953725(-) (pptA) [Streptococcus iners strain 29887]
MLEVKNVTGGYVNIPVLKDVSFTVKDGELVGLIGLNGAGKSTTIKEIIGLLTPYQGQILIDGQGLSQGAESYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLPREAAWERIERLLKIFRLDEKLDWYPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAIADLIALLEEEKARGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLADLQTQFGMAGASLNDIYLALTQE
GAVG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=794752 PW252_RS09510 WP_248049877.1 1952991..1953725(-) (pptA) [Streptococcus iners strain 29887]
ATGTTAGAAGTTAAAAATGTCACAGGGGGCTATGTCAATATCCCTGTTTTGAAAGATGTATCTTTTACGGTTAAAGATGG
AGAACTGGTCGGTCTAATTGGTTTGAATGGTGCCGGGAAATCAACCACTATCAAGGAAATTATCGGTCTCTTAACTCCTT
ACCAAGGTCAAATTTTGATTGATGGCCAAGGTCTTTCTCAGGGAGCAGAAAGCTATCGGAAAAAGATTGGCTTTATCCCG
GAAACACCTAGTTTATACGAGGAGTTGACGCTAAAAGAGCACTTGGAAGTGGTGGCAATGGCTTACGATTTGCCACGGGA
AGCTGCTTGGGAGAGAATCGAGAGATTGCTGAAAATCTTCCGGTTGGACGAGAAGTTAGACTGGTATCCAGTCAATTTTT
CAAAAGGAATGAAGCAGAAGGTCATGATTATCTGTGCTTTTATGGTGGAGCCAAGTTTATTGATTGTTGATGAGCCTTTT
TTGGGCTTGGATCCAGTAGCTATTGCGGATTTGATTGCTCTCTTGGAGGAGGAAAAGGCAAGGGGAACTTCTATTCTCAT
GTCTACTCATGTCTTGGATTCGGCGGAAAAAATGTGTGATTCTTTTGTGATTTTGCACCAAGGACAGGTGCGAGCGACAG
GGAATTTGGCGGACTTACAGACCCAATTTGGCATGGCAGGGGCTAGTTTGAATGATATTTACCTAGCCTTGACCCAAGAA
GGAGCAGTTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

97.951

0.713
  pptA Streptococcus thermophilus LMD-9

72.385

97.951

0.709