Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PW252_RS03985 Genome accession   NZ_CP118735
Coordinates   748080..748883 (+) Length   267 a.a.
NCBI ID   WP_248045053.1    Uniprot ID   A0AA96VNG2
Organism   Streptococcus iners strain 29887     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 743080..753883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS03960 (PW252_03960) - 743507..744205 (-) 699 WP_248051384.1 amino acid ABC transporter permease -
  PW252_RS03965 (PW252_03965) - 744220..745065 (-) 846 WP_248051386.1 transporter substrate-binding domain-containing protein -
  PW252_RS03970 (PW252_03970) - 745076..745837 (-) 762 WP_248051388.1 amino acid ABC transporter ATP-binding protein -
  PW252_RS03975 (PW252_03975) vicR 746027..746731 (+) 705 WP_105114647.1 response regulator YycF Regulator
  PW252_RS03980 (PW252_03980) micB 746724..748073 (+) 1350 WP_172049898.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PW252_RS03985 (PW252_03985) vicX 748080..748883 (+) 804 WP_248045053.1 MBL fold metallo-hydrolase Regulator
  PW252_RS03990 (PW252_03990) vga(F) 749402..750781 (+) 1380 WP_248051391.1 ABC-F type ribosomal protection protein Vga(F) -
  PW252_RS03995 (PW252_03995) pbp2b 750895..752940 (+) 2046 WP_398582953.1 penicillin-binding protein PBP2B -
  PW252_RS04000 (PW252_04000) recR 752949..753545 (+) 597 WP_248051394.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29600.69 Da        Isoelectric Point: 5.9824

>NTDB_id=794735 PW252_RS03985 WP_248045053.1 748080..748883(+) (vicX) [Streptococcus iners strain 29887]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDQVQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=794735 PW252_RS03985 WP_248045053.1 748080..748883(+) (vicX) [Streptococcus iners strain 29887]
ATGATCGGAAAAGGATTTAATTACAGTATTTTAGCTTCAGGATCAAGTGGGAATTGCTTTTATTTGGAAACGGATAAGAA
GAAGATCTTGGTAGATGCTGGTTTATCAGGAAAAAAGATTACCAGCCTTTTGGCAGAAATTGACCGCAAGCCAGAAGATA
TTGATGCTATCTTAGTAACGCATGAACATAGTGACCATATCCATGGTATCGGTGTTCTGGCGCGTAAATATGGCATGGAC
ATTTATGCCAATGAGTTGACCTGGCAGGCAATGGAAAGCAAATTGGGGAAGATTGACCAGGTTCAAAAACATATCTTTGA
ATTGGGGGCTATGAAGACCTTTGGTGACCTAGATATTGAGTCGTTTGGTGTTAGCCATGATGCGGCTTGTCCTCAATTTT
ACCGCTTTATGAAGGATGATAAGTCCTTTGTCATGTTAACGGATACAGGCTATGTCAGCGATCGAATGGCTGGGATTGTG
GCGAATGCAGATGCCTATTTGATTGAGTCTAATCATGATGTTGAAATCTTGCGTGCGGGTTCTTACTCTTGGAACCTCAA
GCAACGGATTTTGTCGGATAAGGGCCACCTTTGTAACGAGGATGGTGCAGATGCCATGATTCGCTCGCTGGGAAATCGGA
CTAAAAAGATTTACCTTGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTTCAGGTCTATGATACCTCGCCAGATACAGCGACACCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.03

100

0.76