Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   PW252_RS03915 Genome accession   NZ_CP118735
Coordinates   733822..734823 (+) Length   333 a.a.
NCBI ID   WP_248051560.1    Uniprot ID   -
Organism   Streptococcus iners strain 29887     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 728822..739823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS03900 (PW252_03900) - 730330..731178 (-) 849 WP_248051544.1 DUF975 family protein -
  PW252_RS03905 (PW252_03905) tgt 731345..732487 (+) 1143 WP_172028712.1 tRNA guanosine(34) transglycosylase Tgt -
  PW252_RS03910 (PW252_03910) - 732528..733613 (-) 1086 WP_248051546.1 M24 family metallopeptidase -
  PW252_RS03915 (PW252_03915) ccpA 733822..734823 (+) 1002 WP_248051560.1 catabolite control protein A Regulator
  PW252_RS03920 (PW252_03920) - 734950..735948 (+) 999 WP_248051548.1 glycosyltransferase family 4 protein -
  PW252_RS03925 (PW252_03925) - 735949..737262 (+) 1314 WP_248051551.1 glycosyltransferase family 4 protein -
  PW252_RS03930 (PW252_03930) - 737344..737691 (+) 348 WP_248051553.1 hypothetical protein -
  PW252_RS03935 (PW252_03935) - 737950..738267 (+) 318 WP_248051555.1 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36562.64 Da        Isoelectric Point: 5.7601

>NTDB_id=794732 PW252_RS03915 WP_248051560.1 733822..734823(+) (ccpA) [Streptococcus iners strain 29887]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASADAVHLLAKNNKKIAFVSGPLVDDINGKVRLAGYKQGLKDNGIDFNEGLVFESKYKYEEGYALAERILNAG
ATAAYVAEDEIAAGLLNGISDKGIKVPEEFEIVTSDDSLVTKFTSPNLTSINQPLYDIGAIAMRMLTKIMHKEDLDNREV
ILNHGLKIRKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=794732 PW252_RS03915 WP_248051560.1 733822..734823(+) (ccpA) [Streptococcus iners strain 29887]
ATGAATACTGATGATACGGTAACGATTTATGACGTGGCCCGTGAAGCAGGCGTATCCATGGCAACAGTATCGCGTGTTGT
GAATGGGAATAAAAATGTCAAGGAAAATACTCGTAAGAAAGTATTGGAAGTGATTGACCGCTTGGACTATCGTCCAAATG
CGGTAGCTAGGGGATTAGCAAGTAAGAAAACGACAACAGTGGGGGTTGTCATTCCAAATATTGCTAATGCTTATTTTGCG
ACCTTGGCTAAAGGGATTGATGATATTGCGGATATGTATAAGTACAATATTGTCCTTGCCAATAGCGATGAAAATGATGA
GAAGGAGATTAACGTAGTCAATACCCTCTTCTCTAAACAGGTGGATGGTATCATTTTCATGGGCTATCATTTGACAGACA
AGATTCGTGCTGAGTTTTCACGTTCTCGGACACCGATCGTTTTAGCAGGTACAGTGGATTTAGAACACCAGTTGCCAAGT
GTCAACATTGACTATGCAGCGGCGAGTGCGGATGCTGTCCATCTCCTTGCTAAAAACAACAAGAAAATTGCCTTTGTATC
AGGTCCGCTTGTGGACGACATCAATGGTAAGGTTCGTCTAGCAGGCTACAAGCAAGGATTGAAGGACAATGGTATTGACT
TCAACGAAGGTCTTGTTTTCGAGTCTAAGTACAAGTATGAAGAAGGCTACGCCCTGGCAGAACGTATTCTAAATGCAGGA
GCAACAGCAGCCTATGTTGCTGAAGATGAGATTGCAGCAGGTTTGTTAAATGGTATTAGCGACAAGGGAATTAAGGTACC
AGAGGAATTTGAAATTGTGACTAGTGATGATTCTTTGGTTACAAAATTCACCAGTCCAAATCTAACCTCTATCAACCAGC
CACTCTATGATATTGGTGCCATTGCTATGCGGATGTTGACCAAAATCATGCACAAGGAAGACTTGGATAACCGCGAAGTT
ATTCTTAACCACGGTCTTAAAATCCGTAAGTCTACCAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.58

100

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577