Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX55_RS07705 Genome accession   NZ_CP132024
Coordinates   1518846..1519619 (-) Length   257 a.a.
NCBI ID   WP_304984500.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4a     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513846..1524619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX55_RS07670 - 1514099..1514869 (-) 771 WP_000473699.1 isoprenyl transferase -
  QFX55_RS07675 frr 1515242..1515796 (-) 555 WP_001280004.1 ribosome recycling factor -
  QFX55_RS07680 pyrH 1515815..1516537 (-) 723 WP_000057330.1 UMP kinase -
  QFX55_RS07685 tsf 1516674..1517555 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX55_RS07690 - 1517590..1517703 (-) 114 WP_001789890.1 hypothetical protein -
  QFX55_RS07695 rpsB 1517737..1518504 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX55_RS07700 - 1518703..1518795 (-) 93 WP_001790530.1 hypothetical protein -
  QFX55_RS07705 codY 1518846..1519619 (-) 774 WP_304984500.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX55_RS07710 hslU 1519644..1521046 (-) 1403 Protein_1485 ATP-dependent protease ATPase subunit HslU -
  QFX55_RS07715 hslV 1521112..1521657 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX55_RS07720 xerC 1521654..1522550 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX55_RS07725 trmFO 1522967..1524274 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28741.06 Da        Isoelectric Point: 5.7568

>NTDB_id=794732 QFX55_RS07705 WP_304984500.1 1518846..1519619(-) (codY) [Staphylococcus aureus strain 2.4a]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKENFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=794732 QFX55_RS07705 WP_304984500.1 1518846..1519619(-) (codY) [Staphylococcus aureus strain 2.4a]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAATTTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428