Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PW220_RS03080 Genome accession   NZ_CP118734
Coordinates   583005..583808 (+) Length   267 a.a.
NCBI ID   WP_248054668.1    Uniprot ID   A0AA97A2F9
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 578005..588808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS03055 (PW220_03055) - 578431..579129 (-) 699 WP_172091624.1 amino acid ABC transporter permease -
  PW220_RS03060 (PW220_03060) - 579144..579989 (-) 846 WP_248054670.1 transporter substrate-binding domain-containing protein -
  PW220_RS03065 (PW220_03065) - 580000..580761 (-) 762 WP_105114648.1 amino acid ABC transporter ATP-binding protein -
  PW220_RS03070 (PW220_03070) vicR 580952..581656 (+) 705 WP_105114647.1 response regulator YycF Regulator
  PW220_RS03075 (PW220_03075) micB 581649..582998 (+) 1350 WP_172091625.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PW220_RS03080 (PW220_03080) vicX 583005..583808 (+) 804 WP_248054668.1 MBL fold metallo-hydrolase Regulator
  PW220_RS03085 (PW220_03085) vga(F) 584336..585715 (+) 1380 WP_248054667.1 ABC-F type ribosomal protection protein Vga(F) -
  PW220_RS03090 (PW220_03090) pbp2b 585829..587874 (+) 2046 WP_398582934.1 penicillin-binding protein PBP2B -
  PW220_RS03095 (PW220_03095) recR 587883..588479 (+) 597 WP_024404490.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29572.68 Da        Isoelectric Point: 6.1688

>NTDB_id=794688 PW220_RS03080 WP_248054668.1 583005..583808(+) (vicX) [Streptococcus iners subsp. hyiners strain 29892]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWKAMESKLGKIDQAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=794688 PW220_RS03080 WP_248054668.1 583005..583808(+) (vicX) [Streptococcus iners subsp. hyiners strain 29892]
ATGATCGGAAAAGGATTTAATTACAGTATTTTAGCTTCGGGATCCAGTGGGAATTGCTTTTATTTGGAAACGGATAAGAA
GAAAATCTTGGTAGATGCTGGTTTATCAGGAAAAAAGATTACCAGCCTTTTGGCAGAAATTGACCGCAAGCCAGAAGATA
TCGATGCTATCTTAGTAACGCATGAACATAGTGACCATATCCATGGTATCGGTGTTCTGGCGCGTAAATATGGCATGGAC
ATTTATGCCAATGAGTTGACCTGGAAGGCAATGGAAAGCAAATTGGGGAAGATTGACCAGGCTCAGAAACATATCTTTGA
ATTGGGGGCTATGAAGACCTTCGGTGACCTAGATATTGAGTCGTTTGGGGTCAGTCATGATGCGGCCTGTCCTCAATTTT
ATCGCTTTATGAAGGATGATAAGTCCTTTGTCATGTTAACGGATACAGGCTATGTCAGCGATCGAATGGCTGGGATTGTA
GCTAATGCGGATGCCTATTTGATTGAGTCTAATCATGATGTTGAAATCTTGCGTGCGGGTTCTTATTCTTGGAACCTCAA
GCAACGGATTTTGTCTGATAAAGGGCACCTTTGTAACGAGGATGGTGCTGATGCCATGATTCGCTCACTAGGAAATCGGA
CTAAAAAGATTTACCTTGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAGGTCTATGATACCTCGCCAGATACAGCGACACCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.655

100

0.757