Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   PW220_RS03015 Genome accession   NZ_CP118734
Coordinates   569993..570994 (+) Length   333 a.a.
NCBI ID   WP_248051560.1    Uniprot ID   -
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 564993..575994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS03000 (PW220_03000) - 566501..567349 (-) 849 WP_248054683.1 DUF975 family protein -
  PW220_RS03005 (PW220_03005) tgt 567516..568658 (+) 1143 WP_248054682.1 tRNA guanosine(34) transglycosylase Tgt -
  PW220_RS03010 (PW220_03010) - 568699..569784 (-) 1086 WP_248054681.1 M24 family metallopeptidase -
  PW220_RS03015 (PW220_03015) ccpA 569993..570994 (+) 1002 WP_248051560.1 catabolite control protein A Regulator
  PW220_RS03020 (PW220_03020) - 571121..572119 (+) 999 WP_105118766.1 glycosyltransferase family 4 protein -
  PW220_RS03025 (PW220_03025) - 572120..573433 (+) 1314 WP_248054679.1 glycosyltransferase family 4 protein -
  PW220_RS03030 (PW220_03030) - 573515..573862 (+) 348 WP_248054678.1 hypothetical protein -
  PW220_RS03035 (PW220_03035) - 574121..574438 (+) 318 WP_248054816.1 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36562.64 Da        Isoelectric Point: 5.7601

>NTDB_id=794685 PW220_RS03015 WP_248051560.1 569993..570994(+) (ccpA) [Streptococcus iners subsp. hyiners strain 29892]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASADAVHLLAKNNKKIAFVSGPLVDDINGKVRLAGYKQGLKDNGIDFNEGLVFESKYKYEEGYALAERILNAG
ATAAYVAEDEIAAGLLNGISDKGIKVPEEFEIVTSDDSLVTKFTSPNLTSINQPLYDIGAIAMRMLTKIMHKEDLDNREV
ILNHGLKIRKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=794685 PW220_RS03015 WP_248051560.1 569993..570994(+) (ccpA) [Streptococcus iners subsp. hyiners strain 29892]
ATGAATACTGATGATACGGTAACGATTTATGACGTGGCCCGTGAAGCAGGCGTATCCATGGCAACAGTGTCGCGTGTTGT
GAATGGGAATAAAAATGTCAAGGAAAATACTCGTAAGAAAGTATTGGAAGTGATTGACCGCTTGGACTATCGTCCAAATG
CGGTAGCTAGGGGATTAGCAAGTAAGAAAACGACAACAGTGGGGGTTGTCATTCCAAATATTGCTAATGCTTATTTTGCG
ACCTTGGCTAAAGGGATTGATGATATTGCGGATATGTATAAGTACAATATTGTCCTTGCCAATAGCGATGAAAATGATGA
GAAGGAGATTAATGTAGTCAATACCCTCTTCTCTAAACAGGTGGATGGTATCATTTTCATGGGCTATCATTTGACAGACA
AGATTCGTGCTGAGTTTTCACGTTCTCGGACACCGATCGTTTTAGCAGGTACAGTGGATTTAGAACACCAATTGCCAAGT
GTCAACATTGACTATGCAGCGGCGAGTGCGGATGCTGTCCATCTTCTTGCTAAAAACAACAAGAAAATAGCCTTTGTATC
AGGTCCGCTTGTGGACGACATCAATGGCAAGGTCCGCCTTGCAGGTTACAAGCAAGGATTGAAGGACAATGGTATTGACT
TCAACGAGGGTCTTGTTTTCGAGTCTAAGTACAAGTATGAAGAAGGCTATGCCCTAGCAGAGCGGATCTTAAATGCAGGA
GCAACAGCTGCCTATGTTGCTGAAGATGAGATTGCAGCAGGTTTGTTAAATGGTATTAGCGATAAGGGAATTAAGGTACC
GGAGGAATTTGAAATTGTGACTAGTGACGATTCTTTGGTTACAAAATTCACCAGTCCAAATCTAACCTCTATCAACCAGC
CACTCTATGATATTGGTGCCATTGCTATGCGGATGTTGACCAAAATCATGCACAAGGAAGACTTGGATAACCGCGAAGTT
ATTCTTAACCACGGTCTTAAAATCCGTAAGTCTACCAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.58

100

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577