Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   PXH68_RS06450 Genome accession   NZ_CP118733
Coordinates   1406123..1407124 (-) Length   333 a.a.
NCBI ID   WP_316716085.1    Uniprot ID   -
Organism   Streptococcus suivaginalis strain 29896     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401123..1412124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS06440 (PXH68_06440) - 1403043..1404404 (-) 1362 WP_248028759.1 ATP-binding protein -
  PXH68_RS06445 (PXH68_06445) - 1404405..1405055 (-) 651 WP_202848294.1 response regulator transcription factor -
  PXH68_RS06450 (PXH68_06450) ccpA 1406123..1407124 (-) 1002 WP_316716085.1 catabolite control protein A Regulator
  PXH68_RS06455 (PXH68_06455) - 1407294..1408379 (+) 1086 WP_205031810.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36732.86 Da        Isoelectric Point: 5.4972

>NTDB_id=794641 PXH68_RS06450 WP_316716085.1 1406123..1407124(-) (ccpA) [Streptococcus suivaginalis strain 29896]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYALATKDAVDLLAKHNQKIAFVSGPLVDDINGKVRLTGYKDGLKANGLEFNEGLVFESKYKYEEGYALAERILNSG
ATAAYVAEDEIAAGLLNGIADKGIKVPDDFEIITSDDSLVTKFTRPNLSSINQPLYDIGAIAMRMLTKIMHKEELENREV
ILNHGIKLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=794641 PXH68_RS06450 WP_316716085.1 1406123..1407124(-) (ccpA) [Streptococcus suivaginalis strain 29896]
CTGAATACAGATGATACAGTAACGATTTACGACGTCGCCCGAGAAGCAGGTGTCTCAATGGCCACTGTCAGTCGCGTGGT
CAACGGAAATAAAAATGTGAAAGAAAATACTCGTAAGAAGGTATTGGAAGTTATTGATCGTTTGGATTACCGTCCTAACG
CTGTTGCACGGGGGTTGGCAAGTAAGAAAACAACAACAGTTGGCGTCGTTATTCCAAACATCGCAAATGCCTACTTTGCA
ACCTTGGCAAAAGGGATTGATGATATTGCTGACATGTATAAATACAATATCGTCCTCGCCAACAGTGATGAGAATGACGA
GAAGGAAATCAATGTTGTCAATACTCTCTTCTCTAAACAGGTGGATGGCATTATCTTTATGGGCTACCATTTGACAGATA
AGATTCGTGCAGAGTTTTCACGCTCACGGACACCGATTGTACTAGCAGGTACAGTTGATTTGGAGCATCAGTTGCCAAGT
GTCAACATTGACTATGCTTTGGCGACCAAAGATGCAGTAGATTTGTTGGCGAAACACAATCAAAAGATTGCCTTTGTGTC
AGGTCCGCTTGTGGATGATATCAATGGAAAAGTTCGTTTGACAGGTTATAAAGATGGCTTAAAAGCAAATGGTTTGGAAT
TTAATGAAGGTCTTGTCTTTGAATCCAAGTACAAATATGAAGAAGGCTATGCACTGGCTGAGCGCATTCTAAACTCAGGA
GCAACAGCTGCCTATGTAGCAGAAGATGAGATTGCAGCTGGGCTGCTCAATGGTATTGCAGACAAGGGTATCAAGGTTCC
AGATGACTTCGAGATTATCACGAGTGATGATTCTCTCGTGACTAAGTTCACTCGACCAAATCTTTCTTCGATTAATCAGC
CATTGTATGATATCGGTGCGATTGCTATGCGGATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAAATCGTGAGGTG
ATTTTGAATCACGGTATCAAACTACGTCAATCTACAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.781

100

0.808
  ccpA Streptococcus gordonii str. Challis substr. CH1

80.48

100

0.805
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577