Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IGS56_RS00180 Genome accession   NZ_AP022846
Coordinates   40610..41284 (-) Length   224 a.a.
NCBI ID   WP_005647998.1    Uniprot ID   Q4QLV0
Organism   Haemophilus influenzae strain TAMBA230     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 35610..46284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS00160 (JPHIA_00320) hinT 37314..37664 (+) 351 WP_005627389.1 purine nucleoside phosphoramidase -
  IGS56_RS00165 (JPHIA_00330) - 37664..38014 (+) 351 WP_005647993.1 YcfL family protein -
  IGS56_RS00170 (JPHIA_00340) nagZ 38018..39070 (+) 1053 WP_071163125.1 beta-N-acetylhexosaminidase -
  IGS56_RS00175 (JPHIA_00350) rlmC 39067..40245 (+) 1179 WP_071163124.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  IGS56_RS00180 (JPHIA_00360) crp 40610..41284 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  IGS56_RS00185 (JPHIA_00370) - 41269..41520 (-) 252 WP_005647999.1 YheU family protein -
  IGS56_RS00190 (JPHIA_00380) slmA 41542..42198 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  IGS56_RS00195 (JPHIA_00390) dut 42202..42657 (-) 456 WP_005631431.1 dUTP diphosphatase -
  IGS56_RS00200 (JPHIA_00400) coaBC 42705..43907 (-) 1203 WP_071163123.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  IGS56_RS00205 (JPHIA_00410) radC 44070..44735 (+) 666 WP_071163122.1 RadC family protein -
  IGS56_RS00210 (JPHIA_00420) rpmB 44949..45185 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  IGS56_RS00215 (JPHIA_00430) rpmG 45197..45367 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25151.85 Da        Isoelectric Point: 6.8375

>NTDB_id=79392 IGS56_RS00180 WP_005647998.1 40610..41284(-) (crp) [Haemophilus influenzae strain TAMBA230]
MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLG
AGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQ
TLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=79392 IGS56_RS00180 WP_005647998.1 40610..41284(-) (crp) [Haemophilus influenzae strain TAMBA230]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAAGCAACTCAACGAGATCCCGTTTTAGA
TTGGTTTCTTACTCACTGCCATTTGCATAAGTATCCTGCAAAATCAACTTTAATTCATGCTGGGGAAGATGCGACCACGC
TGTATTATGTAATTAAAGGTTCTGTAATGGTATCTTCAAAAGATGATGAAGGCAAAGAGATGATCCTCACTTACTTAGGT
GCAGGACAATTTTTTGGCGAAGCGGGATTATTTGATGAAGGTTCAAAACGATCAGCTTGGGTAAAAACAAAAACAACATG
TGAAATTGCTGAAATTTCCTATAAGAAATATCGCCAGTTGATTCAGGCAAACCCTGAAATCTTAATGTTTCTCACTGCAC
AATTGGCAAGACGTTTGCAAAATACATCACGTCAAGTCACGAATTTGGCATTTTTAGACGTCGCAGGTCGCATCGCTCAA
ACTTTAATGAACTTAGCTAAACAGCCTGAAGCAATGACGCATCCTGATGGTATGCAAATCAAAATTACACGCCAAGAAAT
AGGGCAAATGGTGGGTTGTTCACGAGAAACTGTGGGGCGCATTATTAAGATGTTGGAGGATCAGAATCTTATCCACGCTC
ATGGAAAAACAATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(36-124)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

100

100

1
  crp Vibrio cholerae strain A1552

75.49

91.071

0.687
  crp Acinetobacter baumannii D1279779

48.705

86.161

0.42

Multiple sequence alignment