Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PWA56_RS10080 Genome accession   NZ_CP118598
Coordinates   2301482..2303311 (-) Length   609 a.a.
NCBI ID   WP_032684157.1    Uniprot ID   A0A087B7V3
Organism   Bifidobacterium longum subsp. longum strain F2     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2293053..2317906 2301482..2303311 within 0


Gene organization within MGE regions


Location: 2293053..2317906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWA56_RS10045 (PWA56_10045) metG 2293983..2295848 (-) 1866 WP_007054114.1 methionine--tRNA ligase -
  PWA56_RS10050 (PWA56_10050) - 2296165..2296812 (+) 648 WP_007052934.1 hypothetical protein -
  PWA56_RS10720 - 2296803..2297180 (+) 378 WP_007052935.1 hypothetical protein -
  PWA56_RS10060 (PWA56_10060) rsmI 2297207..2298217 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PWA56_RS10070 (PWA56_10070) - 2298797..2300215 (-) 1419 WP_011068650.1 MFS transporter -
  PWA56_RS10075 (PWA56_10075) - 2300297..2301343 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  PWA56_RS10080 (PWA56_10080) rcrQ 2301482..2303311 (-) 1830 WP_032684157.1 ABC transporter ATP-binding protein Regulator
  PWA56_RS10085 (PWA56_10085) rcrP 2303527..2305398 (-) 1872 WP_116464024.1 ABC transporter ATP-binding protein Regulator
  PWA56_RS10090 (PWA56_10090) - 2305585..2306106 (-) 522 WP_116464026.1 MarR family transcriptional regulator -
  PWA56_RS10095 (PWA56_10095) - 2306468..2307031 (+) 564 WP_116464028.1 BRO family protein -
  PWA56_RS10100 (PWA56_10100) - 2307517..2311353 (-) 3837 WP_116464030.1 bacterial Ig-like domain-containing protein -
  PWA56_RS10105 (PWA56_10105) - 2311565..2316106 (-) 4542 WP_116464032.1 exo-beta-1,6-galactobiohydrolase -
  PWA56_RS10110 (PWA56_10110) - 2316410..2317906 (-) 1497 WP_116464034.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66671.01 Da        Isoelectric Point: 5.9522

>NTDB_id=793827 PWA56_RS10080 WP_032684157.1 2301482..2303311(-) (rcrQ) [Bifidobacterium longum subsp. longum strain F2]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=793827 PWA56_RS10080 WP_032684157.1 2301482..2303311(-) (rcrQ) [Bifidobacterium longum subsp. longum strain F2]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCACATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAATGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTACAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
CGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTCACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087B7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.53

96.059

0.524