Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PWW26_RS13115 Genome accession   NZ_CP118596
Coordinates   2781475..2783733 (-) Length   752 a.a.
NCBI ID   WP_274878166.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776475..2788733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS13095 kdsB 2777764..2778522 (-) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PWW26_RS13100 - 2778522..2778701 (-) 180 WP_005378451.1 Trm112 family protein -
  PWW26_RS13105 lpxK 2778682..2779689 (-) 1008 WP_274878165.1 tetraacyldisaccharide 4'-kinase -
  PWW26_RS13110 msbA 2779695..2781443 (-) 1749 WP_029790264.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  PWW26_RS13115 comEC 2781475..2783733 (-) 2259 WP_274878166.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PWW26_RS13120 - 2783742..2784251 (+) 510 WP_005446692.1 DUF2062 domain-containing protein -
  PWW26_RS13125 lolE 2784449..2785693 (-) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  PWW26_RS13130 lolD 2785696..2786397 (-) 702 WP_045487966.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PWW26_RS13135 lolC 2786390..2787598 (-) 1209 WP_274878168.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  PWW26_RS13140 - 2787863..2788432 (+) 570 WP_009698318.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84507.08 Da        Isoelectric Point: 9.6057

>NTDB_id=793808 PWW26_RS13115 WP_274878166.1 2781475..2783733(-) (comEC) [Vibrio harveyi strain fish10]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSIRFLNREASGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKMDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=793808 PWW26_RS13115 WP_274878166.1 2781475..2783733(-) (comEC) [Vibrio harveyi strain fish10]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCGACCGTTTCAAAGGATTCAGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACACTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTCTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCTCTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATACGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTGGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGAGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTATGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCGCCAAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTTGTCGATACCAAAATGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAATCCCAAGTTTGTTGAAGCGATTGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)

Competence protein (Competence)

(208-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.266

100

0.753
  comEC Vibrio parahaemolyticus RIMD 2210633

65.027

100

0.65
  comEC Vibrio cholerae strain A1552

40.849

100

0.41