Detailed information NTG0079376

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HHSLTHF2_RS09840
• Genome accession: NZ_AP022843
• Coordinates: 2053059..2053904 (+)
• Length: 281 a.a.
• NCBI ID: WP_172420905.1
• Uniprot ID: -
• Organism: Halomonas hydrothermalis strain Slthf2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2048059..2058904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHSLTHF2_RS09820 (HHSLTHF2_19330)	-	2048786..2049241 (-)	456	WP_172420902.1	anti-virulence regulator CigR family protein	-
HHSLTHF2_RS19150 (HHSLTHF2_19340)	-	2049407..2049799 (-)	393	WP_172420903.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HHSLTHF2_RS09830 (HHSLTHF2_19350)	pilB	2050055..2051767 (+)	1713	WP_172420904.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HHSLTHF2_RS09835 (HHSLTHF2_19360)	-	2051774..2053003 (+)	1230	WP_197915497.1	type II secretion system F family protein	-
HHSLTHF2_RS09840	pilD	2053059..2053904 (+)	846	WP_172420905.1	A24 family peptidase	Machinery gene
HHSLTHF2_RS09845 (HHSLTHF2_19380)	coaE	2053945..2054541 (+)	597	WP_172420906.1	dephospho-CoA kinase	-
HHSLTHF2_RS09850 (HHSLTHF2_19390)	yacG	2054581..2054814 (+)	234	WP_172420907.1	DNA gyrase inhibitor YacG	-
HHSLTHF2_RS09855 (HHSLTHF2_19400)	-	2054828..2055700 (+)	873	WP_172420908.1	DNA replication terminus site-binding protein	-
HHSLTHF2_RS09860 (HHSLTHF2_19410)	-	2055732..2056073 (-)	342	WP_125748130.1	hypothetical protein	-
HHSLTHF2_RS09865 (HHSLTHF2_19420)	-	2056444..2057349 (+)	906	WP_172420909.1	helix-turn-helix transcriptional regulator	-
HHSLTHF2_RS09870 (HHSLTHF2_19430)	-	2057356..2057730 (-)	375	WP_125748137.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30864.21 Da
• Isoelectric Point: 8.4767

>NTDB_id=79376 HHSLTHF2_RS09840 WP_172420905.1 2053059..2053904(+) (pilD) [Halomonas hydrothermalis strain Slthf2]
MGLPSNCYLFFALLIGLCVGSFLNVVITRLPVMLMRRWRNEARASLELVEETSPRFNLAMPRSMCPRCEQPIAWHDNLPL
IGWLKRRGKCAHCQTSISVQYPFVELMGGLLAVVVVALHGPTLNAMFIYGACVTLLALAVIDFRTYLLPDMLTLPLLWAG
LVYQLLFQPQLLSGAVIGAMAGYLVLWAFYWAFKLITGKEGMGFGDLKLLAALGAWVGWSMLPLLLILSAGIGAAIGLAA
QALFPQLRGQPLPFGPFLALAGWICILVGNELMTLYTSLLY

Nucleotide

• Length: 846 bp

>NTDB_id=79376 HHSLTHF2_RS09840 WP_172420905.1 2053059..2053904(+) (pilD) [Halomonas hydrothermalis strain Slthf2]
ATGGGTTTACCGTCAAACTGTTACCTCTTTTTTGCTTTACTAATCGGCCTCTGCGTTGGCAGTTTTCTTAACGTTGTCAT
CACTCGTTTACCCGTTATGCTAATGCGCCGTTGGCGTAATGAAGCACGCGCCTCGCTTGAGCTGGTCGAAGAAACATCCC
CCCGCTTTAACCTTGCTATGCCAAGGTCAATGTGTCCACGCTGCGAACAACCCATTGCTTGGCACGATAACCTACCTTTA
ATAGGCTGGCTAAAAAGAAGGGGAAAATGCGCCCATTGCCAAACCTCCATCAGTGTACAGTACCCCTTCGTTGAGCTGAT
GGGTGGACTACTTGCAGTCGTCGTTGTGGCCTTGCATGGCCCAACGCTAAACGCAATGTTTATCTATGGCGCTTGTGTCA
CGCTACTGGCCTTGGCAGTAATCGACTTTCGTACCTATTTACTCCCTGACATGTTAACCCTTCCGCTATTATGGGCTGGC
TTAGTTTACCAATTACTCTTTCAGCCACAGCTGCTTTCTGGCGCTGTCATCGGCGCAATGGCGGGCTATCTTGTGCTATG
GGCTTTCTACTGGGCTTTTAAGCTCATAACAGGTAAAGAAGGCATGGGGTTCGGTGATTTGAAATTACTCGCTGCCCTTG
GCGCTTGGGTAGGTTGGAGCATGTTACCGTTGCTGCTTATTTTATCTGCGGGAATTGGCGCAGCCATAGGATTAGCCGCT
CAAGCTCTATTTCCTCAACTGCGCGGCCAGCCTCTCCCCTTTGGTCCCTTTCTTGCGCTGGCGGGCTGGATTTGCATACT
GGTAGGCAACGAGTTAATGACGCTCTATACGTCGCTGCTGTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

• Type IV leader peptidase family (Peptidase_A24) (132-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.909	97.865	0.498
pilD	Acinetobacter baumannii D1279779	46.642	95.374	0.445
pilD	Acinetobacter nosocomialis M2	46.642	95.374	0.445
pilD	Vibrio campbellii strain DS40M4	44.404	98.577	0.438
pilD	Neisseria gonorrhoeae MS11	44.906	94.306	0.423