Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PWW24_RS16050 Genome accession   NZ_CP118590
Coordinates   3390101..3390715 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain fish12     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3385101..3395715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS16030 - 3385387..3386304 (-) 918 WP_053049435.1 ABC transporter ATP-binding protein -
  PWW24_RS16035 - 3386538..3388208 (-) 1671 WP_274791538.1 SulP family inorganic anion transporter -
  PWW24_RS16040 can 3388492..3389160 (+) 669 WP_005446273.1 carbonate dehydratase -
  PWW24_RS16045 hpt 3389249..3389779 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PWW24_RS16050 opaR 3390101..3390715 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PWW24_RS16055 lpdA 3391037..3392467 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PWW24_RS16060 aceF 3392711..3394618 (-) 1908 WP_274791537.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=793758 PWW24_RS16050 WP_005446268.1 3390101..3390715(+) (opaR) [Vibrio harveyi strain fish12]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=793758 PWW24_RS16050 WP_005446268.1 3390101..3390715(+) (opaR) [Vibrio harveyi strain fish12]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGCCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696