Detailed information NTG0793716

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW23_RS15885
• Genome accession: NZ_CP118586
• Coordinates: 3392619..3393488 (+)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain fish6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3387619..3398488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW23_RS15865	nadC	3387985..3388872 (+)	888	WP_199449848.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW23_RS15870	-	3389137..3389604 (+)	468	WP_050933475.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PWW23_RS15875	pilB	3389604..3391289 (+)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW23_RS15880	pilC	3391323..3392546 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW23_RS15885	pilD	3392619..3393488 (+)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWW23_RS15890	coaE	3393489..3394103 (+)	615	WP_050922069.1	dephospho-CoA kinase	-
PWW23_RS15895	zapD	3394131..3394871 (+)	741	WP_038897986.1	cell division protein ZapD	-
PWW23_RS15900	yacG	3394928..3395128 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW23_RS15905	rplS	3395694..3396047 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW23_RS15910	trmD	3396089..3396832 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW23_RS15915	rimM	3396860..3397408 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW23_RS15920	rpsP	3397437..3397685 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=793716 PWW23_RS15885 WP_045488712.1 3392619..3393488(+) (pilD) [Vibrio harveyi strain fish6]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793716 PWW23_RS15885 WP_045488712.1 3392619..3393488(+) (pilD) [Vibrio harveyi strain fish6]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGGATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCCTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436