Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PWW25_RS12940 Genome accession   NZ_CP118584
Coordinates   2753508..2754140 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain fish5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748508..2759140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS12920 - 2750404..2750883 (+) 480 WP_029789495.1 TIGR02444 family protein -
  PWW25_RS12925 - 2750984..2751991 (+) 1008 WP_274876486.1 hydrolase -
  PWW25_RS12930 - 2752062..2752274 (+) 213 WP_005432763.1 YheU family protein -
  PWW25_RS12935 - 2752399..2753268 (+) 870 WP_274876487.1 phosphoribulokinase -
  PWW25_RS12940 crp 2753508..2754140 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PWW25_RS12945 - 2754329..2755120 (-) 792 WP_005451448.1 DUF1338 domain-containing protein -
  PWW25_RS12950 astD 2755385..2756842 (-) 1458 WP_017819681.1 succinylglutamate-semialdehyde dehydrogenase -
  PWW25_RS12955 astA 2756871..2757890 (-) 1020 WP_045482611.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=793672 PWW25_RS12940 WP_005381432.1 2753508..2754140(+) (crp) [Vibrio harveyi strain fish5]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=793672 PWW25_RS12940 WP_005381432.1 2753508..2754140(+) (crp) [Vibrio harveyi strain fish5]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471