Detailed information NTG0793657

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW25_RS11335
• Genome accession: NZ_CP118584
• Coordinates: 2444784..2445653 (+)
• Length: 289 a.a.
• NCBI ID: WP_274876439.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain fish5
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2439784..2450653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW25_RS11315	nadC	2440189..2441076 (+)	888	WP_029790346.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW25_RS11320	pilA	2441341..2441769 (+)	429	WP_009698754.1	pilin	Machinery gene
PWW25_RS11325	pilB	2441769..2443454 (+)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW25_RS11330	pilC	2443488..2444711 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW25_RS11335	pilD	2444784..2445653 (+)	870	WP_274876439.1	A24 family peptidase	Machinery gene
PWW25_RS11340	coaE	2445654..2446268 (+)	615	WP_274876440.1	dephospho-CoA kinase	-
PWW25_RS11345	zapD	2446296..2447036 (+)	741	WP_005446251.1	cell division protein ZapD	-
PWW25_RS11350	yacG	2447093..2447293 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW25_RS11355	rplS	2447583..2447936 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW25_RS11360	trmD	2447978..2448721 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW25_RS11365	rimM	2448749..2449297 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW25_RS11370	rpsP	2449326..2449574 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32606.79 Da
• Isoelectric Point: 7.5715

>NTDB_id=793657 PWW25_RS11335 WP_274876439.1 2444784..2445653(+) (pilD) [Vibrio harveyi strain fish5]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWTGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793657 PWW25_RS11335 WP_274876439.1 2444784..2445653(+) (pilD) [Vibrio harveyi strain fish5]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGACGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436