Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7585_RS26435 Genome accession   NZ_CP131794
Coordinates   5726613..5727209 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2014S01-136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5721613..5732209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7585_RS26415 (Q7585_26430) aroK 5722744..5723262 (-) 519 WP_073667243.1 shikimate kinase AroK -
  Q7585_RS26420 (Q7585_26435) pilQ 5723274..5725418 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  Q7585_RS26425 (Q7585_26440) comL/pilP 5725472..5725996 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q7585_RS26430 (Q7585_26445) pilO 5725993..5726616 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7585_RS26435 (Q7585_26450) pilN 5726613..5727209 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q7585_RS26440 (Q7585_26455) pilM 5727209..5728273 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7585_RS26445 (Q7585_26460) - 5728458..5730929 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=793645 Q7585_RS26435 WP_003095839.1 5726613..5727209(-) (pilN) [Pseudomonas aeruginosa strain 2014S01-136]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=793645 Q7585_RS26435 WP_003095839.1 5726613..5727209(-) (pilN) [Pseudomonas aeruginosa strain 2014S01-136]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369