Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PWW25_RS02345 Genome accession   NZ_CP118584
Coordinates   500432..502690 (+) Length   752 a.a.
NCBI ID   WP_172580470.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495432..507690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS02320 - 495727..496296 (-) 570 WP_009699899.1 PilZ domain-containing protein -
  PWW25_RS02325 lolC 496561..497769 (+) 1209 WP_026000130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  PWW25_RS02330 lolD 497762..498469 (+) 708 WP_274876721.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PWW25_RS02335 lolE 498472..499716 (+) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  PWW25_RS02340 - 499914..500423 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  PWW25_RS02345 comEC 500432..502690 (+) 2259 WP_172580470.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PWW25_RS02350 msbA 502722..504470 (+) 1749 WP_005446696.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  PWW25_RS02355 lpxK 504476..505483 (+) 1008 WP_009700425.1 tetraacyldisaccharide 4'-kinase -
  PWW25_RS02360 - 505464..505643 (+) 180 WP_005378451.1 Trm112 family protein -
  PWW25_RS02365 kdsB 505643..506401 (+) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84497.00 Da        Isoelectric Point: 9.6057

>NTDB_id=793645 PWW25_RS02345 WP_172580470.1 500432..502690(+) (comEC) [Vibrio harveyi strain fish5]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTVKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSMRFLNREASGVLF
LVITSLVLWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWTLVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=793645 PWW25_RS02345 WP_172580470.1 500432..502690(+) (comEC) [Vibrio harveyi strain fish5]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAGTTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCGACCGTTTCAAAGGATTCAGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACACTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTCTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGTGTTGTGGTATGAACGAAAATCTGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCTCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGACCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAATCCCAAGTTTGTTGAAGCGATAGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)

Competence protein (Competence)

(208-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

74.867

100

0.749
  comEC Vibrio parahaemolyticus RIMD 2210633

64.894

100

0.649
  comEC Vibrio cholerae strain A1552

40.849

100

0.41