Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   PWW29_RS16930 Genome accession   NZ_CP118582
Coordinates   3614707..3615351 (+) Length   214 a.a.
NCBI ID   WP_050906941.1    Uniprot ID   A0A8B3DJF2
Organism   Vibrio harveyi strain fish4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3609707..3620351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS16915 - 3610152..3611600 (-) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  PWW29_RS16920 csrD 3611612..3613621 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PWW29_RS16925 ssb 3613873..3614412 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  PWW29_RS16930 qstR 3614707..3615351 (+) 645 WP_050906941.1 LuxR C-terminal-related transcriptional regulator Regulator
  PWW29_RS16935 galU 3615513..3616385 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWW29_RS16940 uvrA 3616523..3619345 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24561.40 Da        Isoelectric Point: 8.7703

>NTDB_id=793633 PWW29_RS16930 WP_050906941.1 3614707..3615351(+) (qstR) [Vibrio harveyi strain fish4]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKALVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=793633 PWW29_RS16930 WP_050906941.1 3614707..3615351(+) (qstR) [Vibrio harveyi strain fish4]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAGCACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAGGGCTTGAGAGAAATCGTGAATGGCCAAAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B3DJF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523