Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PWW29_RS07350 Genome accession   NZ_CP118582
Coordinates   1538209..1540467 (+) Length   752 a.a.
NCBI ID   WP_274883729.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533209..1545467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS07325 - 1533504..1534073 (-) 570 WP_009698318.1 PilZ domain-containing protein -
  PWW29_RS07330 lolC 1534338..1535546 (+) 1209 WP_026000130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  PWW29_RS07335 lolD 1535539..1536246 (+) 708 WP_009698316.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PWW29_RS07340 lolE 1536249..1537493 (+) 1245 WP_274883728.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  PWW29_RS07345 - 1537691..1538200 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  PWW29_RS07350 comEC 1538209..1540467 (+) 2259 WP_274883729.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PWW29_RS07355 msbA 1540499..1542247 (+) 1749 WP_049535780.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  PWW29_RS07360 lpxK 1542253..1543260 (+) 1008 WP_009700425.1 tetraacyldisaccharide 4'-kinase -
  PWW29_RS07365 - 1543241..1543420 (+) 180 WP_005378451.1 Trm112 family protein -
  PWW29_RS07370 kdsB 1543420..1544178 (+) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84548.99 Da        Isoelectric Point: 9.5295

>NTDB_id=793613 PWW29_RS07350 WP_274883729.1 1538209..1540467(+) (comEC) [Vibrio harveyi strain fish4]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSFFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSFSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSMRFLNREASGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWNWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWLLVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=793613 PWW29_RS07350 WP_274883729.1 1538209..1540467(+) (comEC) [Vibrio harveyi strain fish4]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTTTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCGACGGTTTCAAAGGATTCTGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACATTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTTTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
TTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCTTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCATTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTGCCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGAGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCAGGGGAGCGATGGAATTGGCAAGCGCTAGAATTTGAAGTTCTCTGGCCGCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGCTCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
AAGCTCTTCTAACCCCAAGTTTGTTGAAGCGATTGCACCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75

100

0.75
  comEC Vibrio parahaemolyticus RIMD 2210633

64.894

100

0.649
  comEC Vibrio cholerae strain A1552

40.981

100

0.411