Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PWW29_RS00540 Genome accession   NZ_CP118582
Coordinates   91795..92388 (-) Length   197 a.a.
NCBI ID   WP_005451500.1    Uniprot ID   A0A9X3S2A2
Organism   Vibrio harveyi strain fish4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86795..97388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS00520 aroB 87664..88764 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  PWW29_RS00525 aroK 88796..89314 (-) 519 WP_005451507.1 shikimate kinase AroK -
  PWW29_RS00530 pilQ 89504..91255 (-) 1752 WP_274883815.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW29_RS00535 pilP 91290..91805 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  PWW29_RS00540 pilO 91795..92388 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW29_RS00545 pilN 92381..92956 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW29_RS00550 pilM 92940..93956 (-) 1017 WP_026000383.1 type IV pilus assembly protein PilM Machinery gene
  PWW29_RS00555 - 94135..96705 (+) 2571 WP_274883309.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23020.58 Da        Isoelectric Point: 4.8068

>NTDB_id=793597 PWW29_RS00540 WP_005451500.1 91795..92388(-) (pilO) [Vibrio harveyi strain fish4]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=793597 PWW29_RS00540 WP_005451500.1 91795..92388(-) (pilO) [Vibrio harveyi strain fish4]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGTCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

71.066

100

0.711