Detailed information NTG0793581

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW32_RS16650
• Genome accession: NZ_CP118580
• Coordinates: 3530793..3531662 (+)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain fish3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3525793..3536662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW32_RS16630	nadC	3526159..3527046 (+)	888	WP_199449848.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW32_RS16635	-	3527311..3527778 (+)	468	WP_050933475.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PWW32_RS16640	pilB	3527778..3529463 (+)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW32_RS16645	pilC	3529497..3530720 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW32_RS16650	pilD	3530793..3531662 (+)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWW32_RS16655	coaE	3531663..3532277 (+)	615	WP_050922069.1	dephospho-CoA kinase	-
PWW32_RS16660	zapD	3532305..3533045 (+)	741	WP_038897986.1	cell division protein ZapD	-
PWW32_RS16665	yacG	3533102..3533302 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW32_RS16670	rplS	3533868..3534221 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW32_RS16675	trmD	3534263..3535006 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW32_RS16680	rimM	3535034..3535582 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW32_RS16685	rpsP	3535611..3535859 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=793581 PWW32_RS16650 WP_045488712.1 3530793..3531662(+) (pilD) [Vibrio harveyi strain fish3]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793581 PWW32_RS16650 WP_045488712.1 3530793..3531662(+) (pilD) [Vibrio harveyi strain fish3]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGGATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCCTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436