Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PWW22_RS13785 Genome accession   NZ_CP118578
Coordinates   3026018..3026650 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain fish2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021018..3031650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS13765 - 3022914..3023393 (+) 480 WP_017819679.1 TIGR02444 family protein -
  PWW22_RS13770 - 3023494..3024501 (+) 1008 WP_050933194.1 hydrolase -
  PWW22_RS13775 - 3024572..3024784 (+) 213 WP_029789497.1 YheU family protein -
  PWW22_RS13780 - 3024909..3025778 (+) 870 WP_005432770.1 phosphoribulokinase -
  PWW22_RS13785 crp 3026018..3026650 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PWW22_RS13790 - 3026839..3027630 (-) 792 WP_061065420.1 DUF1338 domain-containing protein -
  PWW22_RS13795 astD 3027895..3029352 (-) 1458 WP_274880486.1 succinylglutamate-semialdehyde dehydrogenase -
  PWW22_RS13800 astA 3029381..3030400 (-) 1020 WP_005438349.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=793535 PWW22_RS13785 WP_005381432.1 3026018..3026650(+) (crp) [Vibrio harveyi strain fish2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=793535 PWW22_RS13785 WP_005381432.1 3026018..3026650(+) (crp) [Vibrio harveyi strain fish2]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCGGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471