Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PWW27_RS12455 Genome accession   NZ_CP118576
Coordinates   2647906..2648538 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain fish1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642906..2653538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS12435 - 2644802..2645281 (+) 480 WP_274885761.1 TIGR02444 family protein -
  PWW27_RS12440 - 2645382..2646389 (+) 1008 WP_274885762.1 hydrolase -
  PWW27_RS12445 - 2646460..2646672 (+) 213 WP_005432763.1 YheU family protein -
  PWW27_RS12450 - 2646797..2647666 (+) 870 WP_274885763.1 phosphoribulokinase -
  PWW27_RS12455 crp 2647906..2648538 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PWW27_RS12460 - 2648727..2649518 (-) 792 WP_041060815.1 DUF1338 domain-containing protein -
  PWW27_RS12465 astD 2649783..2651240 (-) 1458 WP_274885764.1 succinylglutamate-semialdehyde dehydrogenase -
  PWW27_RS12470 astA 2651269..2652288 (-) 1020 WP_005438349.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=793488 PWW27_RS12455 WP_005381432.1 2647906..2648538(+) (crp) [Vibrio harveyi strain fish1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=793488 PWW27_RS12455 WP_005381432.1 2647906..2648538(+) (crp) [Vibrio harveyi strain fish1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGATTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471