Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PWW27_RS12240 Genome accession   NZ_CP118576
Coordinates   2601782..2602375 (-) Length   197 a.a.
NCBI ID   WP_005451500.1    Uniprot ID   A0A9X3S2A2
Organism   Vibrio harveyi strain fish1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596782..2607375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS12220 aroB 2597651..2598751 (-) 1101 WP_017819670.1 3-dehydroquinate synthase -
  PWW27_RS12225 aroK 2598783..2599301 (-) 519 WP_005451507.1 shikimate kinase AroK -
  PWW27_RS12230 pilQ 2599491..2601242 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW27_RS12235 pilP 2601277..2601792 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  PWW27_RS12240 pilO 2601782..2602375 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW27_RS12245 pilN 2602368..2602943 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW27_RS12250 pilM 2602927..2603943 (-) 1017 WP_026138410.1 type IV pilus assembly protein PilM Machinery gene
  PWW27_RS12255 - 2604122..2606692 (+) 2571 WP_017190919.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23020.58 Da        Isoelectric Point: 4.8068

>NTDB_id=793485 PWW27_RS12240 WP_005451500.1 2601782..2602375(-) (pilO) [Vibrio harveyi strain fish1]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=793485 PWW27_RS12240 WP_005451500.1 2601782..2602375(-) (pilO) [Vibrio harveyi strain fish1]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

71.066

100

0.711