Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KH172YL63_RS14185 Genome accession   NZ_AP022842
Coordinates   2774990..2776699 (-) Length   569 a.a.
NCBI ID   WP_173106719.1    Uniprot ID   A0A6F8TTI4
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2769990..2781699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS14160 (KH172YL63_28050) - 2770562..2770801 (+) 240 WP_173106714.1 DUF2627 domain-containing protein -
  KH172YL63_RS14165 (KH172YL63_28060) - 2770817..2771551 (-) 735 WP_173106715.1 glycerophosphodiester phosphodiesterase -
  KH172YL63_RS14170 (KH172YL63_28070) - 2771700..2771912 (-) 213 WP_173106716.1 hypothetical protein -
  KH172YL63_RS14175 (KH172YL63_28080) spo0A 2772128..2772907 (-) 780 WP_173106717.1 sporulation transcription factor Spo0A Regulator
  KH172YL63_RS14180 (KH172YL63_28090) spoIVB 2773578..2774864 (-) 1287 WP_173106718.1 SpoIVB peptidase -
  KH172YL63_RS14185 (KH172YL63_28100) recN 2774990..2776699 (-) 1710 WP_173106719.1 DNA repair protein RecN Machinery gene
  KH172YL63_RS14190 (KH172YL63_28110) argR 2776803..2777252 (-) 450 WP_173108189.1 transcriptional regulator ArgR -
  KH172YL63_RS14195 (KH172YL63_28120) - 2777670..2778503 (-) 834 WP_173106720.1 TlyA family RNA methyltransferase -
  KH172YL63_RS14200 (KH172YL63_28130) dxs 2778506..2780398 (-) 1893 WP_173106721.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KH172YL63_RS14205 (KH172YL63_28140) - 2780420..2781043 (-) 624 WP_173106722.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64110.99 Da        Isoelectric Point: 5.2783

>NTDB_id=79344 KH172YL63_RS14185 WP_173106719.1 2774990..2776699(-) (recN) [Bacillus sp. KH172YL63]
MLQELSIKNFAIIDALSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCFQK
AASFGIEIEEGMIILRRDISSTGKSVCRVNGKLVTIAIMREIGGSLIDIHGQHEHQELMNESLHLSLLDQFGGNDIAACL
ESYGEVYKEYLSIYKQLRRLNENEQEMAHRLDLIQFQLKEIQDAELQLNEDEELQEEKRKLTNFEKLFEALQTSYDSIQG
ERKGMDWAGLAMSHLETAAEVDAQHEKTLESVSNAYYMLEDAAHQVRGALDQLEFEPNRLDLIESRLNEINGLKRKYGSS
VEEILAYSSKIEEEIETITNKDSHVEQLQRKLQSLEKDLSLEAKNLTETRKSWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGDKESFSFQHFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQ
SIAEKIYQVAVHSQVMCISHLPQVAAMADCHLFIAKKLSGGRTSTTVKRLQEVDKIKEISRMISGVEITDLTLEHAKELL
QLAASIKKT

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=79344 KH172YL63_RS14185 WP_173106719.1 2774990..2776699(-) (recN) [Bacillus sp. KH172YL63]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATTATCGATGCCCTGTCCCTTTCTTTTGAAGAGGGTCTGACCGTATT
GTCCGGTGAGACCGGTGCCGGTAAGTCCATTATCATTGATGCGATTCATTTGCTGGTGGGAGGAAGAGGATCCTCGGAAT
ATGTGCGTCATGGGGAGAAAAAGGCGGAAATTGAAGGGTTATTTATTCTTGATAATGAAACCCATCCTTGTTTTCAGAAA
GCTGCAAGTTTCGGGATTGAAATCGAGGAAGGTATGATCATCCTTCGCAGGGATATCTCAAGTACGGGTAAAAGCGTTTG
CCGTGTCAACGGTAAGCTCGTGACGATTGCGATCATGAGGGAAATCGGTGGGTCGCTCATCGATATCCATGGTCAGCATG
AGCACCAGGAACTGATGAATGAGAGTCTTCACCTTTCCCTGCTGGATCAGTTCGGCGGCAATGATATTGCGGCATGTTTA
GAGAGCTACGGGGAAGTTTATAAAGAGTATCTGTCCATTTATAAGCAGCTGAGAAGGTTGAATGAGAATGAGCAGGAAAT
GGCCCATCGTCTGGATCTGATTCAATTTCAGCTGAAAGAAATCCAAGATGCGGAACTGCAGCTGAATGAAGACGAAGAGC
TACAAGAAGAGAAGCGTAAGCTCACGAACTTTGAGAAACTTTTTGAGGCGCTTCAAACATCGTATGACAGCATACAGGGT
GAACGGAAAGGGATGGATTGGGCAGGACTTGCGATGAGTCATCTTGAGACGGCTGCCGAGGTGGATGCCCAGCACGAAAA
GACCCTAGAGTCTGTATCCAATGCCTATTACATGCTTGAAGATGCTGCGCACCAGGTTCGCGGTGCCCTGGATCAGCTTG
AGTTCGAGCCGAACCGATTGGATCTCATTGAATCAAGGTTGAATGAAATCAATGGATTGAAGAGGAAATACGGCTCTTCG
GTTGAAGAAATTCTGGCATACAGTTCAAAGATTGAAGAAGAAATCGAAACGATCACAAATAAGGATTCCCACGTGGAACA
GTTGCAGCGTAAATTACAGTCCCTTGAAAAAGATTTATCTCTTGAAGCGAAAAATCTGACGGAAACGAGAAAGTCATGGG
CTAAAAAGTTGACTGCGAGCATCCACGAGCAGTTAAAGCAGCTATATATGGACAAAACAAAATTTGAAGTGCGTTTTGTA
AAGAGTGGTGACAAGGAATCCTTTTCATTTCAGCATTTTAAAAAGGACGGCTGGGATACGGTCGAATTCTACATATCCAC
GAATCCTGGTGAGCCCTTGAAGCCACTGTCCAAGGTTGCTTCAGGCGGGGAACTTTCCCGTATTATGCTTGCCATGAAGA
CCATTTTCTCGAAACATCAGGGTATCACTTCGATCATTTTTGATGAGGTGGATACCGGTGTCAGCGGAAGGGTTGCACAG
TCGATTGCGGAAAAGATCTATCAGGTTGCCGTCCACTCCCAGGTGATGTGTATTTCCCACCTTCCTCAAGTGGCAGCGAT
GGCCGACTGCCACCTGTTCATTGCAAAAAAGCTTTCAGGAGGCAGGACAAGTACTACGGTAAAGCGTCTGCAGGAAGTGG
ACAAGATCAAAGAAATCTCCCGGATGATCTCCGGAGTGGAAATCACAGACCTCACTTTAGAACATGCCAAGGAACTGCTC
CAACTGGCGGCATCCATCAAAAAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TTI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.722

100

0.605

Multiple sequence alignment