Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   PSE45_RS24860 Genome accession   NZ_CP118544
Coordinates   5323923..5324633 (+) Length   236 a.a.
NCBI ID   WP_274874435.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain BCP-09     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5318923..5329633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE45_RS24830 (PSE45_24830) - 5319201..5319776 (+) 576 WP_173599411.1 RDD family protein -
  PSE45_RS24835 (PSE45_24835) - 5320080..5320403 (-) 324 WP_274874432.1 hypothetical protein -
  PSE45_RS24840 (PSE45_24840) - 5320439..5321272 (-) 834 WP_274874433.1 alpha/beta fold hydrolase -
  PSE45_RS24845 (PSE45_24845) - 5321360..5322091 (-) 732 WP_274874434.1 ABC transporter permease -
  PSE45_RS24850 (PSE45_24850) - 5322103..5322861 (-) 759 WP_122963712.1 ABC transporter permease -
  PSE45_RS24855 (PSE45_24855) - 5322858..5323769 (-) 912 WP_122963711.1 ABC transporter ATP-binding protein -
  PSE45_RS24860 (PSE45_24860) scnR 5323923..5324633 (+) 711 WP_274874435.1 response regulator transcription factor Regulator
  PSE45_RS24865 (PSE45_24865) - 5324636..5326039 (+) 1404 WP_274874436.1 sensor histidine kinase -
  PSE45_RS24870 (PSE45_24870) - 5326219..5326812 (-) 594 WP_122963708.1 YdeI/OmpD-associated family protein -
  PSE45_RS24875 (PSE45_24875) - 5327101..5327520 (-) 420 WP_122963707.1 SRPBCC family protein -
  PSE45_RS24880 (PSE45_24880) - 5327517..5327864 (-) 348 WP_274874437.1 ArsR/SmtB family transcription factor -
  PSE45_RS28135 - 5328279..5328431 (-) 153 WP_338076110.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27075.43 Da        Isoelectric Point: 6.4994

>NTDB_id=793176 PSE45_RS24860 WP_274874435.1 5323923..5324633(+) (scnR) [Brevibacillus parabrevis strain BCP-09]
MDELKQKKLLIVDDEPEIRKMVEHFLRKEGFMRIYHAGDCREALELCRSIQPDLAILDVMLPDGDGFSLLQAIRHISNLP
VLFLSAKGQDEDRILGLGLGADDYIVKPFLPRELVLRLTAILRRVYIPHTPEKRPVFQLDDRLIDLEAGTIRHDGTNIPL
TAKEIALLGKFYENHNRIVTSDALCQAAWGDDYYGYENTLMVHIRRIREKIEANPSRPAHLLTVRGLGYKLIVKEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=793176 PSE45_RS24860 WP_274874435.1 5323923..5324633(+) (scnR) [Brevibacillus parabrevis strain BCP-09]
ATGGACGAACTGAAACAGAAAAAGCTGCTTATCGTCGATGATGAGCCTGAAATCCGAAAAATGGTCGAGCATTTTTTGCG
CAAGGAAGGATTCATGCGCATTTACCATGCGGGCGATTGCAGAGAAGCGCTGGAGCTTTGTCGTTCCATCCAGCCTGACC
TCGCCATTCTTGATGTCATGCTGCCGGATGGCGACGGCTTTTCCTTGCTGCAAGCGATCCGGCATATTTCGAACTTGCCC
GTGCTGTTTTTGTCTGCCAAAGGACAGGATGAAGACCGAATCCTCGGCCTCGGACTGGGCGCGGATGATTACATCGTGAA
ACCGTTTTTGCCACGGGAGCTTGTCTTGCGGCTGACGGCTATTTTGCGCAGAGTGTACATTCCCCACACGCCGGAAAAAC
GCCCTGTTTTTCAACTGGACGACCGTCTCATTGACTTGGAGGCTGGCACCATTCGCCATGACGGAACAAATATCCCGCTG
ACCGCAAAAGAAATCGCTCTGCTCGGCAAGTTTTATGAGAACCACAATCGCATCGTCACGAGCGACGCGCTCTGTCAGGC
CGCATGGGGCGACGACTATTACGGCTATGAAAATACGCTGATGGTGCACATTCGGCGCATTCGGGAAAAAATCGAAGCGA
ATCCTTCCCGACCCGCTCATTTGCTGACCGTGCGCGGACTCGGCTACAAGCTGATCGTAAAGGAGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.965

97.034

0.504
  micA Streptococcus pneumoniae Cp1015

41.739

97.458

0.407
  vicR Streptococcus mutans UA159

40.693

97.881

0.398