Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HRS36_RS14420 Genome accession   NZ_AP022839
Coordinates   3050506..3051207 (+) Length   233 a.a.
NCBI ID   WP_226905481.1    Uniprot ID   -
Organism   Legionella antarctica strain TUM19329     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3051928..3056753 3050506..3051207 flank 721
IScluster/Tn 3051928..3055218 3050506..3051207 flank 721


Gene organization within MGE regions


Location: 3050506..3056753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS14420 comFC 3050506..3051207 (+) 702 WP_226905481.1 ComF family protein Machinery gene
  HRS36_RS14425 - 3051928..3053091 (+) 1164 Protein_2862 IS3 family transposase -
  HRS36_RS14430 (TUM19329_29160) - 3054056..3055218 (+) 1163 WP_226905474.1 IS3 family transposase -
  HRS36_RS14435 (TUM19329_29170) - 3055389..3056459 (-) 1071 WP_173237841.1 M50 family metallopeptidase -
  HRS36_RS14440 (TUM19329_29180) - 3056478..3056753 (-) 276 WP_173237842.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26351.80 Da        Isoelectric Point: 9.6730

>NTDB_id=79311 HRS36_RS14420 WP_226905481.1 3050506..3051207(+) (comFC) [Legionella antarctica strain TUM19329]
MRQKLHSITQTLRLPSICILCNQFHKSTLAVCSSCIEFIKPLGPACQHCATPLPDKDYPVCGQCIQKPPHFDRALVNYRF
EEPLRSLLHHFKYNNGLYLSSFLSQIMLHSAQNQSISAQCLIPVPMHSKRLKQRGFNQAALLAKRLARKLNLPYDATTCQ
KIINTTPQASLNSEQRKKNLHHAFHAGPLPYEHVILIDDLLTTGCTANELARTIKKTGVQKVDLWCCARTVKN

Nucleotide


Download         Length: 702 bp        

>NTDB_id=79311 HRS36_RS14420 WP_226905481.1 3050506..3051207(+) (comFC) [Legionella antarctica strain TUM19329]
ATGCGCCAGAAGCTGCACAGTATAACACAGACTTTGCGTCTGCCTTCAATCTGCATACTTTGCAATCAATTTCATAAAAG
TACTTTAGCTGTATGTTCTTCATGCATTGAGTTTATTAAACCTCTGGGTCCTGCCTGCCAACATTGCGCTACCCCGCTTC
CAGATAAGGATTACCCTGTTTGCGGACAATGCATACAAAAGCCACCTCATTTTGACAGGGCACTAGTAAACTATAGGTTT
GAAGAGCCTTTACGCAGTCTGTTACATCATTTTAAATACAATAATGGCCTTTATCTCAGCTCTTTTCTTTCTCAGATCAT
GTTGCACAGCGCACAAAATCAATCAATTTCTGCCCAGTGTTTAATTCCTGTGCCTATGCATTCCAAAAGGTTAAAGCAGC
GAGGGTTCAACCAGGCTGCTCTTTTGGCTAAACGATTAGCTCGCAAGTTAAATCTGCCATATGATGCAACAACGTGCCAA
AAAATCATTAATACTACGCCTCAGGCCAGTCTCAATAGCGAACAAAGAAAAAAAAACTTGCACCATGCCTTTCATGCCGG
TCCCCTGCCCTATGAACACGTCATCCTAATTGATGATCTTCTCACTACCGGCTGCACTGCAAATGAGTTAGCGCGCACCA
TAAAAAAAACCGGGGTGCAAAAAGTTGATTTATGGTGTTGCGCCAGAACAGTGAAAAATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

64.935

99.142

0.644
  comFC Legionella pneumophila strain ERS1305867

62.176

82.833

0.515

Multiple sequence alignment