NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PWS06_RS04280	Genome accession	NZ_CP118532
Coordinates	876917..877786 (-)	Length	289 a.a.
NCBI ID	WP_045488712.1	Uniprot ID	A0A9X3MI55
Organism	Vibrio harveyi strain 160-19
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 871917..882786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWS06_RS04245	rpsP	872919..873167 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
PWS06_RS04250	rimM	873196..873744 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWS06_RS04255	trmD	873772..874515 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWS06_RS04260	rplS	874557..874910 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
PWS06_RS04265	yacG	875277..875477 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWS06_RS04270	zapD	875534..876274 (-)	741	WP_005446251.1	cell division protein ZapD	-
PWS06_RS04275	coaE	876302..876916 (-)	615	WP_274790538.1	dephospho-CoA kinase	-
PWS06_RS04280	pilD	876917..877786 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWS06_RS04285	pilC	877859..879082 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWS06_RS04290	pilB	879116..880801 (-)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWS06_RS04295	pilA	880807..881268 (-)	462	WP_050940736.1	pilin	Machinery gene
PWS06_RS04300	nadC	881533..882420 (-)	888	WP_045393857.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 32576.76 Da Isoelectric Point: 7.5715

                                >NTDB_id=792981 PWS06_RS04280 WP_045488712.1 876917..877786(-) (pilD) [Vibrio harveyi strain 160-19]

MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR

DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP

LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV

IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

Download Length: 870 bp

                                >NTDB_id=792981 PWS06_RS04280 WP_045488712.1 876917..877786(-) (pilD) [Vibrio harveyi strain 160-19]

ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA

CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA

TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGCTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA

GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC

TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG

TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA

TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC

AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA

AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC

ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC

AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436

Detailed information NTG0792981