NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PUT85_RS02685	Genome accession	NZ_CP118530
Coordinates	532463..533332 (-)	Length	289 a.a.
NCBI ID	WP_045488712.1	Uniprot ID	A0A9X3MI55
Organism	Vibrio harveyi strain A2
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 527463..538332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUT85_RS02650	rpsP	528465..528713 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
PUT85_RS02655	rimM	528742..529290 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
PUT85_RS02660	trmD	529318..530061 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PUT85_RS02665	rplS	530103..530456 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
PUT85_RS02670	yacG	530823..531023 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PUT85_RS02675	zapD	531080..531820 (-)	741	WP_005446251.1	cell division protein ZapD	-
PUT85_RS02680	coaE	531848..532462 (-)	615	WP_017817675.1	dephospho-CoA kinase	-
PUT85_RS02685	pilD	532463..533332 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PUT85_RS02690	pilC	533405..534628 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PUT85_RS02695	pilB	534662..536347 (-)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PUT85_RS02700	pilA	536353..536814 (-)	462	WP_050940736.1	pilin	Machinery gene
PUT85_RS02705	nadC	537079..537966 (-)	888	WP_045393857.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 32576.76 Da Isoelectric Point: 7.5715

                                >NTDB_id=792925 PUT85_RS02685 WP_045488712.1 532463..533332(-) (pilD) [Vibrio harveyi strain A2]

MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR

DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP

LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV

IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

Download Length: 870 bp

                                >NTDB_id=792925 PUT85_RS02685 WP_045488712.1 532463..533332(-) (pilD) [Vibrio harveyi strain A2]

ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA

CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA

TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGCTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA

GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC

TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG

TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA

TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC

AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA

AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC

ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC

AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436

Detailed information NTG0792925