Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HRS36_RS03215 Genome accession   NZ_AP022839
Coordinates   642499..643572 (-) Length   357 a.a.
NCBI ID   WP_173236219.1    Uniprot ID   A0A6F8T273
Organism   Legionella antarctica strain TUM19329     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 637499..648572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS03185 (TUM19329_06220) - 637561..638088 (+) 528 WP_226905619.1 class II glutamine amidotransferase -
  HRS36_RS03190 (TUM19329_06230) - 638213..638626 (+) 414 WP_173236214.1 hypothetical protein -
  HRS36_RS03195 (TUM19329_06240) - 638619..639062 (-) 444 WP_173236215.1 DUF721 domain-containing protein -
  HRS36_RS03200 (TUM19329_06250) - 639199..639654 (+) 456 WP_173236216.1 PH domain-containing protein -
  HRS36_RS03205 (TUM19329_06260) topA 639703..641982 (-) 2280 WP_173236217.1 type I DNA topoisomerase -
  HRS36_RS03210 (TUM19329_06270) - 642060..642497 (-) 438 WP_173236218.1 DUF494 family protein -
  HRS36_RS03215 (TUM19329_06280) dprA 642499..643572 (-) 1074 WP_173236219.1 DNA-processing protein DprA Machinery gene
  HRS36_RS03220 (TUM19329_06290) - 643569..644606 (-) 1038 WP_173236220.1 LysM peptidoglycan-binding domain-containing protein -
  HRS36_RS03225 (TUM19329_06300) def 644698..645213 (+) 516 WP_173236221.1 peptide deformylase -
  HRS36_RS03230 (TUM19329_06310) fmt 645210..646154 (+) 945 WP_173236222.1 methionyl-tRNA formyltransferase -
  HRS36_RS03235 (TUM19329_06320) rsmB 646151..647437 (+) 1287 WP_173236223.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HRS36_RS03240 (TUM19329_06330) - 647434..648183 (+) 750 WP_173236224.1 CPBP family intramembrane metalloprotease -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39327.56 Da        Isoelectric Point: 7.0331

>NTDB_id=79287 HRS36_RS03215 WP_173236219.1 642499..643572(-) (dprA) [Legionella antarctica strain TUM19329]
MKNLRYYLALNRMNQIGPRTVAKLEKRWPDLYNMFQLSTQELESAGLPPLLAQTITRFDLNQVDADLNWLEEGDDHHLLT
WNCKNYPDLLKEIADPPVVLYAKGQLSCLDQSKLAIVGSRNPSVTGSENARQFAKELSLHPITIVSGLALGIDAQAHIGC
LEAYGQTIAVLGTGIDCIYPRRHLKLAEQIAQNGLLISEFPLKSPPIAGHFPRRNRIISGLSLCILVVEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHHLLQQGAKLVTSVKDVLDELRIEHHQLTSDKPIFSLASGNENLVKFIGFEMTSV
DQIIMRSGCSVEQVTGELAKLELLGTIMSVPGGYMRC

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=79287 HRS36_RS03215 WP_173236219.1 642499..643572(-) (dprA) [Legionella antarctica strain TUM19329]
ATGAAAAACTTACGCTACTACCTCGCTTTAAACAGAATGAATCAAATTGGTCCGCGCACAGTGGCTAAACTGGAAAAACG
CTGGCCTGATTTGTACAATATGTTTCAACTGTCAACCCAGGAACTGGAAAGTGCCGGGTTACCTCCCCTACTGGCTCAAA
CGATAACCCGCTTTGATTTAAATCAAGTTGATGCTGATTTAAATTGGTTAGAGGAAGGAGATGATCATCATTTACTAACC
TGGAACTGCAAAAACTACCCGGATCTGTTAAAAGAAATTGCTGACCCACCGGTAGTTCTATACGCCAAGGGGCAATTATC
TTGTCTGGATCAATCCAAATTAGCTATTGTAGGGAGTCGTAATCCCTCAGTGACCGGAAGTGAAAATGCACGACAGTTTG
CGAAAGAGCTTTCTCTCCACCCTATTACCATTGTAAGCGGTTTAGCTTTGGGTATTGATGCCCAGGCACACATAGGGTGT
TTGGAGGCATATGGTCAAACTATAGCCGTTTTAGGAACAGGAATAGATTGCATTTACCCACGTCGCCACTTAAAACTAGC
TGAGCAAATCGCCCAAAATGGCTTGTTGATATCTGAGTTTCCGTTAAAAAGCCCACCAATTGCTGGACATTTTCCACGCA
GAAATCGTATAATAAGCGGCTTATCATTGTGCATTTTGGTTGTTGAGGCGGCAATTAAGAGCGGTTCCTTAATTACAGCA
AGAATGGCTTTGGAACAAAACAGAGATGTTTTAGCTATTCCCGGTTCGATTCATAACCCTCTAGCTCGTGGCTGTCACCA
CTTGTTACAGCAAGGAGCTAAACTTGTGACTTCTGTTAAAGACGTTCTTGACGAACTAAGAATAGAACATCACCAGTTAA
CTAGTGATAAACCTATTTTTTCCCTTGCCAGCGGGAACGAAAACCTAGTAAAGTTCATTGGCTTTGAAATGACAAGTGTC
GATCAAATCATAATGCGCAGTGGGTGCAGTGTGGAACAAGTCACTGGTGAGCTTGCAAAATTAGAATTACTGGGAACAAT
TATGTCGGTCCCTGGCGGCTATATGAGGTGTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(300-353)

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8T273

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

76.471

100

0.765
  dprA Vibrio campbellii strain DS40M4

45.152

100

0.457
  dprA Vibrio cholerae strain A1552

42.35

100

0.434
  dprA Glaesserella parasuis strain SC1401

40

100

0.42

Multiple sequence alignment