Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PVT72_RS11525 Genome accession   NZ_CP118495
Coordinates   2461292..2461627 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain FC02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2456292..2466627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT72_RS11505 (PVT72_11505) gcvT 2456903..2458003 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  PVT72_RS11510 (PVT72_11510) - 2458426..2460096 (+) 1671 WP_003153107.1 SNF2-related protein -
  PVT72_RS11515 (PVT72_11515) - 2460114..2460908 (+) 795 WP_264254871.1 YqhG family protein -
  PVT72_RS11520 (PVT72_11520) sinI 2461085..2461258 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  PVT72_RS11525 (PVT72_11525) sinR 2461292..2461627 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  PVT72_RS11530 (PVT72_11530) - 2461675..2462460 (-) 786 WP_003153102.1 TasA family protein -
  PVT72_RS11535 (PVT72_11535) - 2462524..2463108 (-) 585 WP_012117977.1 signal peptidase I -
  PVT72_RS11540 (PVT72_11540) tapA 2463080..2463751 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  PVT72_RS11545 (PVT72_11545) - 2464010..2464339 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  PVT72_RS11550 (PVT72_11550) - 2464379..2464558 (-) 180 WP_003153093.1 YqzE family protein -
  PVT72_RS11555 (PVT72_11555) comGG 2464615..2464993 (-) 379 Protein_2229 competence type IV pilus minor pilin ComGG -
  PVT72_RS11560 (PVT72_11560) comGF 2464994..2465494 (-) 501 WP_274799405.1 competence type IV pilus minor pilin ComGF -
  PVT72_RS11565 (PVT72_11565) comGE 2465403..2465717 (-) 315 WP_274799406.1 competence type IV pilus minor pilin ComGE Machinery gene
  PVT72_RS11570 (PVT72_11570) comGD 2465701..2466138 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  PVT72_RS11575 (PVT72_11575) comGC 2466128..2466436 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=792792 PVT72_RS11525 WP_003153104.1 2461292..2461627(+) (sinR) [Bacillus velezensis strain FC02]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=792792 PVT72_RS11525 WP_003153104.1 2461292..2461627(+) (sinR) [Bacillus velezensis strain FC02]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991