Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q7610_RS01830 Genome accession   NZ_CP131724
Coordinates   353566..354801 (-) Length   411 a.a.
NCBI ID   WP_005658618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018N05-309     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 348566..359801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7610_RS01795 (Q7610_01795) - 349115..349735 (-) 621 WP_005687845.1 YigZ family protein -
  Q7610_RS01800 (Q7610_01800) tusA 349850..350089 (+) 240 WP_005658610.1 sulfurtransferase TusA -
  Q7610_RS01805 (Q7610_01805) htpX 350131..350985 (-) 855 WP_162837812.1 protease HtpX -
  Q7610_RS01810 (Q7610_01810) - 351150..351539 (-) 390 WP_005630808.1 RidA family protein -
  Q7610_RS01815 (Q7610_01815) - 351597..352349 (-) 753 WP_042594238.1 VacJ family lipoprotein -
  Q7610_RS01820 (Q7610_01820) nusG 352447..353004 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  Q7610_RS01825 (Q7610_01825) secE 353006..353422 (-) 417 WP_005648602.1 preprotein translocase subunit SecE -
  Q7610_RS01830 (Q7610_01830) clpX 353566..354801 (-) 1236 WP_005658618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  Q7610_RS01835 (Q7610_01835) clpP 354811..355422 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  Q7610_RS01840 (Q7610_01840) tig 355515..356813 (-) 1299 WP_136429512.1 trigger factor -
  Q7610_RS01845 (Q7610_01845) - 357114..357244 (+) 131 Protein_349 PT domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45610.20 Da        Isoelectric Point: 4.7350

>NTDB_id=792544 Q7610_RS01830 WP_005658618.1 353566..354801(-) (clpX) [Haemophilus influenzae strain 2018N05-309]
MTDKDKDLHCSFCGKEKGEVDKLIAGTGGYICNECIELCHSMLEESNDENLEESAVENKDKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=792544 Q7610_RS01830 WP_005658618.1 353566..354801(-) (clpX) [Haemophilus influenzae strain 2018N05-309]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTGCTGGCAC
AGGCGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTAATGATGAAAACCTAGAGGAAA
GTGCGGTCGAAAATAAAGATAAATTGCCAACGCCTCACGAAATTCGCGCCCATCTGGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCGGTTTATAATCATTATAAACGCTTGAGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGCAAAAGTAATATTTTACTTATAGGGCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCAGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTGGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGGGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGTGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATCGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCCAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACAGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCCAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.843

99.27

0.574
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

97.08

0.535