Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QMM33_RS00990 Genome accession   NZ_AP025940
Coordinates   185995..186588 (+) Length   197 a.a.
NCBI ID   WP_000271487.1    Uniprot ID   Q97SY4
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 180995..191588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS00970 (PC0204_01760) ribE 182177..182644 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  QMM33_RS00975 (PC0204_01770) - 182645..183850 (-) 1206 WP_001854153.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  QMM33_RS00980 (PC0204_01780) ribE 183870..184505 (-) 636 WP_000493839.1 riboflavin synthase -
  QMM33_RS00985 (PC0204_01790) ribD 184490..185590 (-) 1101 WP_001284096.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QMM33_RS00990 (PC0204_01800) ruvA 185995..186588 (+) 594 WP_000271487.1 Holliday junction branch migration protein RuvA Machinery gene
  QMM33_RS00995 (PC0204_01810) - 186598..187161 (+) 564 WP_000166605.1 DNA-3-methyladenine glycosylase I -
  QMM33_RS01000 (PC0204_01820) - 187158..187835 (+) 678 WP_050207146.1 type II CAAX endopeptidase family protein -
  QMM33_RS01005 (PC0204_01830) - 187972..189003 (-) 1032 WP_050207147.1 S66 peptidase family protein -
  QMM33_RS01010 (PC0204_01840) - 189258..189941 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  QMM33_RS01015 (PC0204_01850) - 189953..190897 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21606.10 Da        Isoelectric Point: 6.7338

>NTDB_id=79246 QMM33_RS00990 WP_000271487.1 185995..186588(+) (ruvA) [Streptococcus pneumoniae strain PZ900700204]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=79246 QMM33_RS00990 WP_000271487.1 185995..186588(+) (ruvA) [Streptococcus pneumoniae strain PZ900700204]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAATATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97SY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

100

100

1
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416