Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q7613_RS05455 Genome accession   NZ_CP131720
Coordinates   1091925..1094006 (+) Length   693 a.a.
NCBI ID   WP_342123495.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086925..1099006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS05435 (Q7613_05435) gap 1087515..1088534 (-) 1020 WP_006995751.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  Q7613_RS05440 (Q7613_05440) gmk 1088786..1089412 (+) 627 WP_021035427.1 guanylate kinase -
  Q7613_RS05445 (Q7613_05445) rpoZ 1089475..1089741 (+) 267 WP_005625717.1 DNA-directed RNA polymerase subunit omega -
  Q7613_RS05450 (Q7613_05450) spoT 1089814..1091928 (+) 2115 WP_011272775.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  Q7613_RS05455 (Q7613_05455) recG 1091925..1094006 (+) 2082 WP_342123495.1 ATP-dependent DNA helicase RecG Machinery gene
  Q7613_RS05460 (Q7613_05460) murI 1094036..1094845 (+) 810 WP_044365004.1 glutamate racemase -
  Q7613_RS05465 (Q7613_05465) lldD 1095057..1096202 (+) 1146 WP_011272772.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78016.47 Da        Isoelectric Point: 8.1045

>NTDB_id=792382 Q7613_RS05455 WP_342123495.1 1091925..1094006(+) (recG) [Haemophilus influenzae strain 2016N07-308]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIQNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQAGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALTLLDKVQIAEILPNEFNPHQYSLKEAFRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFHPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRIANLMRDRKMIPTVQHYAKSLIQKYPDVAESLICRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=792382 Q7613_RS05455 WP_342123495.1 1091925..1094006(+) (recG) [Haemophilus influenzae strain 2016N07-308]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCAGAATCTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGAATGCGTAATAGTTT
TCAAGCAGGTGTGCGAGTAAAGGCCTTTGGCGAAGTGAAACGTGGTCGCCATATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAGGGGTTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGACATTACTCGACAAGGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTTCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCAACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTAGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCCGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCGGGATTTCATCCCCATCAGTTAATTATGAC
GGCCACACCGATTCCGAGAACGTTGGCAATGACCGTATATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GTCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCGCTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCGACGACAGTCATCGAAGTGGGGGTTGATGTTCCG
AATGCAAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTAGGTAAAGTTTCGCAAAAGCGTTTGCAAGTGCTAA
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAATAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCTGTCGCTGGCTCAATAATAAAGAAATTTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.333

97.403

0.481
  recG/mmsA Streptococcus pneumoniae R6

38.473

100

0.385
  recG/mmsA Streptococcus pneumoniae R36A

38.473

100

0.385
  recG Bacillus subtilis subsp. subtilis str. 168

38.633

97.114

0.375