Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   QMM27_RS09505 Genome accession   NZ_AP025939
Coordinates   1856343..1856837 (-) Length   164 a.a.
NCBI ID   WP_223842291.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1851343..1861837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS09475 (Utah35B_18350) - 1851653..1852528 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  QMM27_RS09480 (Utah35B_18360) pstC 1852646..1853509 (+) 864 WP_000595180.1 phosphate ABC transporter permease subunit PstC -
  QMM27_RS09485 (Utah35B_18370) pstA 1853502..1854317 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  QMM27_RS09490 (Utah35B_18380) pstB 1854319..1855071 (+) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  QMM27_RS09495 (Utah35B_18390) phoU 1855086..1855736 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  QMM27_RS09500 (Utah35B_18400) - 1855798..1856220 (+) 423 Protein_1839 transposase -
  QMM27_RS09505 (Utah35B_18410) comR 1856343..1856837 (-) 495 WP_223842291.1 helix-turn-helix transcriptional regulator Regulator
  QMM27_RS09510 (Utah35B_18420) - 1856995..1858011 (+) 1017 WP_000415108.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  QMM27_RS09515 (Utah35B_18430) galU 1858033..1858932 (+) 900 WP_000202229.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMM27_RS09520 (Utah35B_18440) - 1858999..1859676 (-) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  QMM27_RS09525 (Utah35B_18450) - 1859660..1860199 (-) 540 WP_000834308.1 5-formyltetrahydrofolate cyclo-ligase -
  QMM27_RS09530 (Utah35B_18460) - 1860211..1861341 (-) 1131 WP_000885102.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19738.77 Da        Isoelectric Point: 4.8839

>NTDB_id=79220 QMM27_RS09505 WP_223842291.1 1856343..1856837(-) (comR) [Streptococcus pneumoniae strain Utah_35B-24]
MIQYMLIIEVNNSGSSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPTLTKLKYIAERLEVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETIAQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALANYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=79220 QMM27_RS09505 WP_223842291.1 1856343..1856837(-) (comR) [Streptococcus pneumoniae strain Utah_35B-24]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAAGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAACACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCGCCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTAGCACTAGCGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)

Helix-turn-helix (HTH_3)

(26-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55.833

73.171

0.409
  comR Streptococcus pyogenes MGAS315

54.167

73.171

0.396
  comR Streptococcus mutans UA159

53.333

73.171

0.39