Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q7616_RS07105 Genome accession   NZ_CP131717
Coordinates   1396946..1398985 (-) Length   679 a.a.
NCBI ID   WP_005687320.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1391946..1403985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS07095 (Q7616_07100) - 1392492..1394762 (+) 2271 WP_342119894.1 NADP-dependent malic enzyme -
  Q7616_RS07100 (Q7616_07105) - 1394990..1396915 (+) 1926 WP_342119896.1 LTA synthase family protein -
  Q7616_RS07105 (Q7616_07110) uvrB 1396946..1398985 (-) 2040 WP_005687320.1 excinuclease ABC subunit UvrB Machinery gene
  Q7616_RS07115 (Q7616_07120) zevB 1399600..1400568 (-) 969 WP_118806537.1 zinc transporter permease subunit ZevB -
  Q7616_RS07120 (Q7616_07125) zevA 1400571..1401191 (-) 621 WP_110432017.1 zinc transporter binding subunit ZevA -
  Q7616_RS07125 (Q7616_07130) - 1401516..1401821 (+) 306 WP_118806538.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Q7616_RS07130 (Q7616_07135) - 1401832..1402155 (+) 324 WP_005650217.1 HigA family addiction module antitoxin -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77553.07 Da        Isoelectric Point: 5.0891

>NTDB_id=792193 Q7616_RS07105 WP_005687320.1 1396946..1398985(-) (uvrB) [Haemophilus influenzae strain 2016N21-284]
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQ
QIKKLEQQMYKFAQDLEFEKAAAIRNQLHQLREQFVFDN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=792193 Q7616_RS07105 WP_005687320.1 1396946..1398985(-) (uvrB) [Haemophilus influenzae strain 2016N21-284]
ATGTCTGAAAAAATCAACACAAAACCATTCATTCTGCATTCCGACTTTCGTCCCTCTGGCGATCAGCCACAAGCTATCGA
AAAATTGGCTGAAAATTTAACGGATGGTTTGGCGCATCAAACTTTACTCGGGGTAACAGGCTCGGGGAAAACCTTTACTA
TCGCCAATGTAATCGCTCAATTAAATCGCCCCGCGATGTTACTTGCACCGAATAAAACCCTTGCTGCTCAGCTTTATGCA
GAAATGAAAGCTTTTTTTCCAGAAAATGCGGTGGAATATTTTGTGTCTTACTATGATTATTATCAGCCAGAAGCCTATGT
GCCGAGCAGTGATACATTTATTGAAAAAGATGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCTGCGACGAAAT
CTTTTCTAGAACGTCGAGACACCATCGTGGTAGCGTCTGTTTCTGCAATTTATGGTTTGGGCGATCCTGATAGCTATTTA
CAAATGATGTTGCATTTACAACAAGGTGCCATTATCGATCAACGCCAAATTTTAGCGAAGTTAGCGGAATTACAATATAC
CCGCAATGATCAAGCATTTCAGCGTGGAACTTTCCGTGTTCGCGGAGAAATTATTGATATTTTCCCTGCGGAATCTGATG
ATCGTGCGGTGCGTATTGAATTATTTGATGATGAAATCGAGCGTTTAAGTTTATTTGATCCGCTCACTGGTAGTAGTTTT
GGTGCTGTACCACGTTTTACGATCTATCCTAAAACTCATTATGTGACGCCAAGAGAACGTATTTTAGATGCGATAGAAAA
CATCAAAAAAGAACTGGTATCACGCCGTGAATATTTCATTAAAGAACATAAACTTTTAGAAGAACAACGTATCAGCCAGC
GTACCCAATTTGATATTGAAATGATGAATGAATTGGGCTATTGCTCGGGAATTGAAAACTACTCTCGCTATTTATCGGGA
AGAAATGAGGGCGAACCACCACCAACATTATTTGATTATATGCCCTCTGATGCCATTTTAATTATTGATGAATCTCATGT
AACTGTGCCTCAAATTGGTGGAATGTATCGTGGCGACCGTTCACGTAAAGAAACCTTAGTCGAATATGGTTTCCGTTTGC
CATCCGCCTTGGATAATCGTCCGTTACGCTTTGAGGAATTTGAACGCTTAGCTCCGCAAACCATTTATGTTTCCGCAACA
CCAGGACCTTATGAATTAGAAAAATCAGGCAGTGAAATCATCGATCAAGTGGTTCGCCCCACTGGTTTACTTGATCCACT
CATTGAAATTCGTCCAGTGTCAATTCAAGTGGATGATTTACTTTCCGAAGCTCGCCAAAGAGCGGATAAAAATGAGCGAG
TTTTAGTCACAACACTCACTAAAAAAATGGCGGAAGATTTAACGGATTATTTGGATGAACACGGGATTCGTGTGCGTTAT
CTGCATTCCGATATTGATACTGTGGAGCGAGTAGAAATTATCCGTGATTTGCGTTTAGGGGAATTTGATGTATTGGTTGG
AATTAACTTATTGCGTGAAGGTTTAGATATTCCTGAAGTGTCTCTTGTGGCGATTTTAGATGCGGACAAAGAAGGATTTT
TACGTTCTGAACGCTCTTTGATCCAAACCATCGGTCGTGCTGCGCGAAACTTAAATGGTAAAGCAATTTTATATGCAGAT
AGCATCACAAAATCCATGGAAAAAGCCATCACCGAAACTAATCGTCGTCGTGAAAAACAAATAAAATACAATGAAGAACA
TGGCATTGTGCCACAAGCATTGAATAAGAAAGTCGGTGAATTATTAGATATTGGGCAAGGTGCAAACCAAAAAGCGAAAG
CCAATAAACAACGTGGAAAAATGGCGGCAGAACCAACCGCACTTTATAATGCACCGAAAAATGCCAAAGAATATCAACAA
CAAATCAAAAAATTGGAACAACAAATGTATAAATTTGCGCAAGATTTGGAATTTGAAAAAGCCGCGGCAATTCGCAATCA
ATTACATCAATTGCGTGAACAATTTGTTTTTGATAACTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(20-102)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(640-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae R6

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae D39

57.292

98.969

0.567