Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q7617_RS06050 Genome accession   NZ_CP131716
Coordinates   1197581..1199662 (+) Length   693 a.a.
NCBI ID   WP_005668042.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192581..1204662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS06030 (Q7617_06030) gap 1193172..1194191 (-) 1020 WP_005649897.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  Q7617_RS06035 (Q7617_06035) gmk 1194442..1195068 (+) 627 WP_005649899.1 guanylate kinase -
  Q7617_RS06040 (Q7617_06040) rpoZ 1195131..1195397 (+) 267 WP_005649900.1 DNA-directed RNA polymerase subunit omega -
  Q7617_RS06045 (Q7617_06045) spoT 1195470..1197584 (+) 2115 WP_342124394.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  Q7617_RS06050 (Q7617_06050) recG 1197581..1199662 (+) 2082 WP_005668042.1 ATP-dependent DNA helicase RecG Machinery gene
  Q7617_RS06055 (Q7617_06055) murI 1199692..1200501 (+) 810 WP_005668044.1 glutamate racemase -
  Q7617_RS06060 (Q7617_06060) lldD 1200715..1201860 (+) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78075.61 Da        Isoelectric Point: 8.4320

>NTDB_id=792125 Q7617_RS06050 WP_005668042.1 1197581..1199662(+) (recG) [Haemophilus influenzae strain 2016C10-304]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIQNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEIKRGRHMSEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKLLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=792125 Q7617_RS06050 WP_005668042.1 1197581..1199662(+) (recG) [Haemophilus influenzae strain 2016C10-304]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCAGAACCTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGCCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGAATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCCTTTGGAGAGATAAAACGTGGGCGTCACATGTCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCACCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACGACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCCACTAATGCGCAAAAACGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTAGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCCGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTGGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCGGGATTTTATCCCCATCAGTTAATTATGAC
GGCCACGCCGATTCCGAGAACGTTGGCAATGACCGTATATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GTCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCGCTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCGACGACAGTCATCGAAGTGGGTGTTGATGTTCCG
AATGCTAGTTTGATGATTATCGAAAATGCAGAGCGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTCGGCAAAGTTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGCATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCCAAATT
ATTGATTCAAAAATACCCTGATGTGGCAGAGAGCTTAATCCGTCGCTGGCTCAATAATAAAGAAATCTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(273-405)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.778

97.403

0.485
  recG Bacillus subtilis subsp. subtilis str. 168

39.552

96.681

0.382
  recG/mmsA Streptococcus pneumoniae R6

39.574

94.805

0.375
  recG/mmsA Streptococcus pneumoniae R36A

39.574

94.805

0.375