Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   Q7621_RS08005 Genome accession   NZ_CP131712
Coordinates   1622930..1624945 (-) Length   671 a.a.
NCBI ID   WP_001048748.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1617930..1629945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS07990 (Q7621_07985) - 1620376..1620603 (-) 228 WP_000576349.1 hypothetical protein -
  Q7621_RS07995 (Q7621_07990) - 1620959..1621279 (+) 321 WP_000361700.1 hypothetical protein -
  Q7621_RS08000 (Q7621_07995) - 1621633..1622613 (-) 981 WP_000795116.1 acetylxylan esterase -
  Q7621_RS08005 (Q7621_08000) recG/mmsA 1622930..1624945 (-) 2016 WP_001048748.1 ATP-dependent DNA helicase RecG Machinery gene
  Q7621_RS08010 (Q7621_08005) alr 1624964..1626067 (-) 1104 WP_000648075.1 alanine racemase -
  Q7621_RS08015 (Q7621_08010) acpS 1626057..1626419 (-) 363 WP_000635008.1 holo-ACP synthase -
  Q7621_RS08020 (Q7621_08015) - 1626464..1627495 (-) 1032 WP_000864060.1 3-deoxy-7-phosphoheptulonate synthase -
  Q7621_RS08025 (Q7621_08020) - 1627497..1628528 (-) 1032 WP_000232209.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75331.02 Da        Isoelectric Point: 6.0675

>NTDB_id=791665 Q7621_RS08005 WP_001048748.1 1622930..1624945(-) (recG/mmsA) [Streptococcus pneumoniae strain 2008C09-280]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLELEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLAQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLAEYKQALRRIKFEELFYFQMQLQMLKSENRVQGSGLVLNWSQE
KVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFES
LQNLFPNLKLALLIGSLKAAEKREVLETIAKGEADLIIGTHALIQDGVEYARLALIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPLIEESEALDLKN
AIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEAWQEDPEWRMIALHLEKKEHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=791665 Q7621_RS08005 WP_001048748.1 1622930..1624945(-) (recG/mmsA) [Streptococcus pneumoniae strain 2008C09-280]
ATGAATCTACATCAACCCTTGCATGTCTTGCCTGGTGTGGGACCAAAGTCAGCAGAAAAATACGCCAAACTAGGAATTGA
AAACTTGCAAGATCTCTTGCTCTACTTTCCTTTCCGTTATGAAGACTTCAAAACCAAGCAGGTGCTGGAGCTGGAAGACG
GTGAGAAGGCAGTTCTTTCTGGTCAGGTAGTGACTCCTGCTAGTGTCCAGTATTATGGTTTCAAGCGCAATCGCCTGCGT
TTTAGTCTCAAGCAGGGAGAGGTCGTTTTTGCGGTGAATTTCTTTAACCAGCCCTATCTGGCTGATAAAATAGAGTTGGG
AGCAACCCTTGCTGTCTTTGGAAAATGGGACCGCGCTAAGGCTAGTCTGACTGGGATGAAGGTTCTGGCTCAGGTAGAAG
ATGACCTCCAGCCTGTCTATCGTCTGGCTCAGGGAATCAGTCAGGCCAGTCTGGTCAAGGTCATCAAGACGGCTTTTGAT
CAGGGACTGGACCTCTTGATAGAAGAAAATCTGCCCCAGTCTTTACTAGACAAATACAAACTCATGTCCCGTTGTCAGGC
AGTCCGAGCTATGCATTTTCCAAAGGATTTGGCAGAATACAAGCAGGCTCTTCGCCGTATAAAGTTTGAGGAACTCTTTT
ATTTCCAAATGCAGCTGCAGATGCTCAAGTCTGAAAATAGAGTTCAGGGAAGTGGTCTGGTTCTGAATTGGTCTCAGGAA
AAAGTGACAGCAGTTAAAGTAAGTCTTCCTTTTGCCCTGACCCAAGCTCAGGAAAAGAGTTTGCAGGAAATTTTAACTGA
TATGAAGTCCGACCACCACATGAATCGTCTCCTACAAGGGGATGTGGGGAGTGGAAAAACGGTAGTCGCTGGCTTGGCCA
TGTTTGCGGCAGTGACAGCAGGTTATCAGGCTGCCCTAATGGTACCAACAGAAATCCTCGCAGAGCAACACTTTGAGAGT
TTACAGAACCTTTTTCCCAATTTGAAACTGGCTCTCTTGATAGGTTCCTTGAAAGCTGCAGAAAAGAGAGAGGTCTTGGA
GACCATTGCCAAGGGTGAGGCTGATTTGATTATCGGAACTCACGCTCTGATACAAGATGGGGTGGAGTATGCTCGTCTTG
CTTTGATTATTATCGATGAGCAGCACCGTTTTGGTGTAGGGCAAAGGCGTATTTTACGGGAAAAAGGTGACAATCCAGAT
GTCCTCATGATGACGGCGACTCCCATTCCACGGACGCTTGCCATCACAGCCTTTGGAGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGTCGGAAGCCTATTGTGACGCGCTGGATCAAACATGAGCAACTACCTCAGGTCTTGACTTGGTTAG
AGGGGGAAATTCAAAAAGGTTCCCAAGCCTATGTCATCTCTCCTTTGATTGAAGAATCAGAAGCTCTAGATTTGAAAAAT
GCCATTGCCTTATCAGAGGAGTTGACGACTCATTTTGCAGGCAAGGCAGAGGTGGCTCTTCTACATGGTAGGATGAAGAG
TGACGAAAAAGACCAGATCATGCAGGATTTCAAGGAGAGAAAGACGGATATTCTGGTTTCGACGACGGTTATTGAGGTTG
GGGTCAACGTTCCCAATGCGACTGTCATGATTATCATGGATGCCGATCGCTTCGGTCTCAGTCAACTTCACCAGCTTAGA
GGTCGTGTCGGTCGGGGGGACAAGCAGTCCTACGCTGTTCTCGTTGCTAATCCCAAGACGGATTCTGGGAAAGACCGCAT
GCGTATCATGACAGAAACGACCAATGGATTTGTCCTTGCGGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAGATTTTTG
GAACCAGACAGTCAGGACTTCCAGAGTTCCAAGTGGCTGATATTATCGAAGATTTTCCGATTTTAGAAGAAGCAAGAAAG
GTTGCTAGCTACATTAGTTCTATAGAAGCTTGGCAAGAAGATCCAGAGTGGCGCATGATTGCCCTTCATCTGGAAAAGAA
AGAACATCTGGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

RecG wedge domain (RecG_wedge)

(11-158)

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

99.255

100

0.993
  recG/mmsA Streptococcus pneumoniae R36A

99.255

100

0.993
  recG Bacillus subtilis subsp. subtilis str. 168

48.968

100

0.495
  recG Neisseria meningitidis strain C311

38.576

100

0.387