Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   Q7621_RS00855 Genome accession   NZ_CP131712
Coordinates   159705..160298 (+) Length   197 a.a.
NCBI ID   WP_000271489.1    Uniprot ID   Q8DRE8
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154705..165298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS00835 (Q7621_00835) ribE 155887..156354 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  Q7621_RS00840 (Q7621_00840) - 156355..157560 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  Q7621_RS00845 (Q7621_00845) ribE 157580..158215 (-) 636 WP_000493841.1 riboflavin synthase -
  Q7621_RS00850 (Q7621_00850) ribD 158200..159300 (-) 1101 WP_001284100.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  Q7621_RS00855 (Q7621_00855) ruvA 159705..160298 (+) 594 WP_000271489.1 Holliday junction branch migration protein RuvA Machinery gene
  Q7621_RS00860 (Q7621_00860) - 160308..160871 (+) 564 WP_000166600.1 DNA-3-methyladenine glycosylase I -
  Q7621_RS00865 (Q7621_00865) - 160868..161545 (+) 678 WP_000987429.1 type II CAAX endopeptidase family protein -
  Q7621_RS00870 (Q7621_00870) - 161682..162713 (-) 1032 WP_000255102.1 S66 peptidase family protein -
  Q7621_RS00875 (Q7621_00875) - 162968..163651 (-) 684 WP_341966612.1 DUF1129 domain-containing protein -
  Q7621_RS00880 (Q7621_00880) - 163663..164607 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21548.06 Da        Isoelectric Point: 7.3085

>NTDB_id=791604 Q7621_RS00855 WP_000271489.1 159705..160298(+) (ruvA) [Streptococcus pneumoniae strain 2008C09-280]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=791604 Q7621_RS00855 WP_000271489.1 159705..160298(+) (ruvA) [Streptococcus pneumoniae strain 2008C09-280]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

100

100

1
  ruvA Streptococcus pneumoniae D39

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416